23 items (Exophiala xenobiotica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV05_10268	Uncharacterized protein. (813 aa)
	PV05_07017	WD_REPEATS_REGION domain-containing protein. (362 aa)
	PV05_05185	Thymidylate synthase. (388 aa)
	PV05_02197	Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (702 aa)
	PV05_00579	Uncharacterized protein. (379 aa)
	PV05_00588	Uncharacterized protein. (716 aa)
	PV05_07256	Uncharacterized protein. (830 aa)
	PV05_02141	Uncharacterized protein. (224 aa)
	PV05_04682	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (530 aa)
	PV05_06616	Uncharacterized protein. (484 aa)
	PV05_11415	Uncharacterized protein. (113 aa)
	PV05_11927	Uncharacterized protein. (256 aa)
	PV05_10899	Uncharacterized protein. (285 aa)
	PV05_01018	Glutamine amidotransferase type-1 domain-containing protein. (256 aa)
	PV05_00682	SAC domain-containing protein. (1065 aa)
	PV05_02409	Glutamine amidotransferase type-1 domain-containing protein. (250 aa)
	PV05_07499	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs. (755 aa)
	PV05_11879	KIX_2 domain-containing protein. (1476 aa)
	PV05_01721	ELYS domain-containing protein. (307 aa)
	PV05_04920	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (1031 aa)
	PV05_06648	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family. (152 aa)
	PV05_09333	Uncharacterized protein. (710 aa)
	PV05_06206	PPIase cyclophilin-type domain-containing protein. (578 aa)

Your Current Organism:

Exophiala xenobiotica

NCBI taxonomy Id: 348802
Other names: CBS 118157, E. xenobiotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV05_00579	PV05_02141	A0A0D2EX79	A0A0D2F544	Uncharacterized protein.	Uncharacterized protein.	0.952
PV05_00579	PV05_02197	A0A0D2EX79	A0A0D2EPW2	Uncharacterized protein.	Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.995
PV05_00579	PV05_07499	A0A0D2EX79	A0A0D2CYH2	Uncharacterized protein.	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs.	0.508
PV05_02141	PV05_00579	A0A0D2F544	A0A0D2EX79	Uncharacterized protein.	Uncharacterized protein.	0.952
PV05_02141	PV05_02197	A0A0D2F544	A0A0D2EPW2	Uncharacterized protein.	Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.951
PV05_02197	PV05_00579	A0A0D2EPW2	A0A0D2EX79	Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.995
PV05_02197	PV05_02141	A0A0D2EPW2	A0A0D2F544	Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.951
PV05_02197	PV05_05185	A0A0D2EPW2	A0A0D2EMA0	Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Thymidylate synthase.	0.733
PV05_02197	PV05_07499	A0A0D2EPW2	A0A0D2CYH2	Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs.	0.658
PV05_05185	PV05_02197	A0A0D2EMA0	A0A0D2EPW2	Thymidylate synthase.	Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.733
PV05_06206	PV05_07017	A0A0D2EED9	A0A0D2EJ22	PPIase cyclophilin-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.574
PV05_07017	PV05_06206	A0A0D2EJ22	A0A0D2EED9	WD_REPEATS_REGION domain-containing protein.	PPIase cyclophilin-type domain-containing protein.	0.574
PV05_07499	PV05_00579	A0A0D2CYH2	A0A0D2EX79	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs.	Uncharacterized protein.	0.508
PV05_07499	PV05_02197	A0A0D2CYH2	A0A0D2EPW2	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs.	Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.658