(13 nodes) Type 1 protein exporter network (Exophiala xenobiotica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV05_00033	Uncharacterized protein. (1323 aa)
	PV05_00910	Uncharacterized protein. (1322 aa)
	PV05_10642	Uncharacterized protein. (1367 aa)
	PV05_01792	Uncharacterized protein. (1118 aa)
	PV05_11485	Uncharacterized protein. (804 aa)
	PV05_08797	Uncharacterized protein. (1341 aa)
	PV05_07586	Uncharacterized protein. (968 aa)
	PV05_05419	Uncharacterized protein. (1262 aa)
	PV05_03319	Uncharacterized protein. (833 aa)
	PV05_08591	Uncharacterized protein. (973 aa)
	PV05_01793	ABC transmembrane type-1 domain-containing protein. (162 aa)
	PV05_01297	Uncharacterized protein. (1311 aa)
	PV05_09422	Iron-sulfur clusters transporter atm1, mitochondrial. (738 aa)

Your Current Organism:

Exophiala xenobiotica

NCBI taxonomy Id: 348802
Other names: CBS 118157, E. xenobiotica

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV05_00033	PV05_09422	A0A0D2C4F5	A0A0D2BEJ9	Uncharacterized protein.	Iron-sulfur clusters transporter atm1, mitochondrial.	0.523
PV05_00033	PV05_11485	A0A0D2C4F5	A0A0D2E506	Uncharacterized protein.	Uncharacterized protein.	0.472
PV05_00910	PV05_09422	A0A0D2C717	A0A0D2BEJ9	Uncharacterized protein.	Iron-sulfur clusters transporter atm1, mitochondrial.	0.523
PV05_00910	PV05_11485	A0A0D2C717	A0A0D2E506	Uncharacterized protein.	Uncharacterized protein.	0.472
PV05_01297	PV05_05419	A0A0D2FLY0	A0A0D2EPY7	Uncharacterized protein.	Uncharacterized protein.	0.471
PV05_01297	PV05_09422	A0A0D2FLY0	A0A0D2BEJ9	Uncharacterized protein.	Iron-sulfur clusters transporter atm1, mitochondrial.	0.523
PV05_01297	PV05_10642	A0A0D2FLY0	A0A0D2CPV4	Uncharacterized protein.	Uncharacterized protein.	0.488
PV05_01297	PV05_11485	A0A0D2FLY0	A0A0D2E506	Uncharacterized protein.	Uncharacterized protein.	0.472
PV05_01792	PV05_01793	A0A0D2DHD2	A0A0D2F1A6	Uncharacterized protein.	ABC transmembrane type-1 domain-containing protein.	0.515
PV05_01792	PV05_09422	A0A0D2DHD2	A0A0D2BEJ9	Uncharacterized protein.	Iron-sulfur clusters transporter atm1, mitochondrial.	0.523
PV05_01792	PV05_11485	A0A0D2DHD2	A0A0D2E506	Uncharacterized protein.	Uncharacterized protein.	0.472
PV05_01793	PV05_01792	A0A0D2F1A6	A0A0D2DHD2	ABC transmembrane type-1 domain-containing protein.	Uncharacterized protein.	0.515
PV05_01793	PV05_09422	A0A0D2F1A6	A0A0D2BEJ9	ABC transmembrane type-1 domain-containing protein.	Iron-sulfur clusters transporter atm1, mitochondrial.	0.523
PV05_01793	PV05_11485	A0A0D2F1A6	A0A0D2E506	ABC transmembrane type-1 domain-containing protein.	Uncharacterized protein.	0.472
PV05_03319	PV05_11485	A0A0D2ESW1	A0A0D2E506	Uncharacterized protein.	Uncharacterized protein.	0.555
PV05_05419	PV05_01297	A0A0D2EPY7	A0A0D2FLY0	Uncharacterized protein.	Uncharacterized protein.	0.471
PV05_05419	PV05_09422	A0A0D2EPY7	A0A0D2BEJ9	Uncharacterized protein.	Iron-sulfur clusters transporter atm1, mitochondrial.	0.523
PV05_05419	PV05_11485	A0A0D2EPY7	A0A0D2E506	Uncharacterized protein.	Uncharacterized protein.	0.472
PV05_07586	PV05_11485	A0A0D2EKT3	A0A0D2E506	Uncharacterized protein.	Uncharacterized protein.	0.544
PV05_08591	PV05_11485	A0A0D2EZ14	A0A0D2E506	Uncharacterized protein.	Uncharacterized protein.	0.549