5 items (Exophiala xenobiotica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV05_01317	Uncharacterized protein. (469 aa)
	PV05_02494	Uncharacterized protein. (1079 aa)
	PV05_08073	Uncharacterized protein. (998 aa)
	PV05_00949	Uncharacterized protein. (1205 aa)
	PV05_03846	SPX domain-containing protein. (921 aa)

Your Current Organism:

Exophiala xenobiotica

NCBI taxonomy Id: 348802
Other names: CBS 118157, E. xenobiotica

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV05_00949	PV05_01317	A0A0D2C758	A0A0D2F2J8	Uncharacterized protein.	Uncharacterized protein.	0.406
PV05_00949	PV05_02494	A0A0D2C758	A0A0D2EQH1	Uncharacterized protein.	Uncharacterized protein.	0.895
PV05_00949	PV05_03846	A0A0D2C758	A0A0D2FGW7	Uncharacterized protein.	SPX domain-containing protein.	0.608
PV05_00949	PV05_08073	A0A0D2C758	A0A0D2EAU3	Uncharacterized protein.	Uncharacterized protein.	0.935
PV05_01317	PV05_00949	A0A0D2F2J8	A0A0D2C758	Uncharacterized protein.	Uncharacterized protein.	0.406
PV05_01317	PV05_08073	A0A0D2F2J8	A0A0D2EAU3	Uncharacterized protein.	Uncharacterized protein.	0.453
PV05_02494	PV05_00949	A0A0D2EQH1	A0A0D2C758	Uncharacterized protein.	Uncharacterized protein.	0.895
PV05_02494	PV05_08073	A0A0D2EQH1	A0A0D2EAU3	Uncharacterized protein.	Uncharacterized protein.	0.907
PV05_03846	PV05_00949	A0A0D2FGW7	A0A0D2C758	SPX domain-containing protein.	Uncharacterized protein.	0.608
PV05_03846	PV05_08073	A0A0D2FGW7	A0A0D2EAU3	SPX domain-containing protein.	Uncharacterized protein.	0.585
PV05_08073	PV05_00949	A0A0D2EAU3	A0A0D2C758	Uncharacterized protein.	Uncharacterized protein.	0.935
PV05_08073	PV05_01317	A0A0D2EAU3	A0A0D2F2J8	Uncharacterized protein.	Uncharacterized protein.	0.453
PV05_08073	PV05_02494	A0A0D2EAU3	A0A0D2EQH1	Uncharacterized protein.	Uncharacterized protein.	0.907
PV05_08073	PV05_03846	A0A0D2EAU3	A0A0D2FGW7	Uncharacterized protein.	SPX domain-containing protein.	0.585