(13 nodes) Ubiquitin homologues network (Exophiala xenobiotica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV05_05079	Polyubiquitin. (305 aa)
	PV05_09775	Ubiquitin-like protein 1. (77 aa)
	PV05_09953	Ubiquitin-like domain-containing protein. (480 aa)
	PV05_08021	Ubiquitin-like domain-containing protein. (101 aa)
	PV05_06909	Ubiquitin-like domain-containing protein. (713 aa)
	PV05_02781	Uncharacterized protein. (202 aa)
	PV05_11605	Ubiquitin-60S ribosomal protein L40. (128 aa)
	PV05_10446	UV excision repair protein Rad23. (383 aa)
	PV05_07085	Uncharacterized protein. (467 aa)
	PV05_05876	Ubiquitin carboxyl-terminal hydrolase. (576 aa)
	PV05_09373	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	PV05_00634	Ubiquitin-like domain-containing protein. (438 aa)
	PV05_01194	Uncharacterized protein. (434 aa)

Your Current Organism:

Exophiala xenobiotica

NCBI taxonomy Id: 348802
Other names: CBS 118157, E. xenobiotica

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV05_00634	PV05_01194	A0A0D2EXF3	A0A0D2EZB9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.798
PV05_00634	PV05_02781	A0A0D2EXF3	A0A0D2D7D8	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.857
PV05_00634	PV05_05876	A0A0D2EXF3	A0A0D2EP73	Ubiquitin-like domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.931
PV05_00634	PV05_06909	A0A0D2EXF3	A0A0D2CWM8	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.530
PV05_00634	PV05_07085	A0A0D2EXF3	A0A0D2EH47	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.857
PV05_00634	PV05_08021	A0A0D2EXF3	A0A0D2BJ03	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.828
PV05_00634	PV05_09373	A0A0D2EXF3	A0A0D2ERZ6	Ubiquitin-like domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.864
PV05_00634	PV05_09775	A0A0D2EXF3	A0A0D2BFU0	Ubiquitin-like domain-containing protein.	Ubiquitin-like protein 1.	0.769
PV05_00634	PV05_10446	A0A0D2EXF3	A0A0D2EAQ1	Ubiquitin-like domain-containing protein.	UV excision repair protein Rad23.	0.936
PV05_00634	PV05_11605	A0A0D2EXF3	A0A0D2E3E4	Ubiquitin-like domain-containing protein.	Ubiquitin-60S ribosomal protein L40.	0.857
PV05_01194	PV05_00634	A0A0D2EZB9	A0A0D2EXF3	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.798
PV05_01194	PV05_02781	A0A0D2EZB9	A0A0D2D7D8	Uncharacterized protein.	Uncharacterized protein.	0.617
PV05_01194	PV05_05079	A0A0D2EZB9	A0A0D2F8Q2	Uncharacterized protein.	Polyubiquitin.	0.950
PV05_01194	PV05_07085	A0A0D2EZB9	A0A0D2EH47	Uncharacterized protein.	Uncharacterized protein.	0.743
PV05_01194	PV05_09373	A0A0D2EZB9	A0A0D2ERZ6	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.817
PV05_01194	PV05_09775	A0A0D2EZB9	A0A0D2BFU0	Uncharacterized protein.	Ubiquitin-like protein 1.	0.639
PV05_01194	PV05_10446	A0A0D2EZB9	A0A0D2EAQ1	Uncharacterized protein.	UV excision repair protein Rad23.	0.934
PV05_01194	PV05_11605	A0A0D2EZB9	A0A0D2E3E4	Uncharacterized protein.	Ubiquitin-60S ribosomal protein L40.	0.773
PV05_02781	PV05_00634	A0A0D2D7D8	A0A0D2EXF3	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.857
PV05_02781	PV05_01194	A0A0D2D7D8	A0A0D2EZB9	Uncharacterized protein.	Uncharacterized protein.	0.617