(7 nodes) Small ribosomal subunit, and Structural constituent of ribosome network (Megasphaera paucivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpsP	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (88 aa)
	rpsB	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (247 aa)
	rpsI	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (130 aa)
	rpsO	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (88 aa)
	rpsJ	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa)
	rpsG	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
	rpsF	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (94 aa)

Your Current Organism:

Megasphaera paucivorans

NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpsB	rpsF	SAMN05660299_00561	SAMN05660299_02358	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
rpsB	rpsG	SAMN05660299_00561	SAMN05660299_02025	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rpsB	rpsI	SAMN05660299_00561	SAMN05660299_00875	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsB	rpsJ	SAMN05660299_00561	SAMN05660299_01763	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsB	rpsO	SAMN05660299_00561	SAMN05660299_01166	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rpsB	rpsP	SAMN05660299_00561	SAMN05660299_00154	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsF	rpsB	SAMN05660299_02358	SAMN05660299_00561	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsF	rpsG	SAMN05660299_02358	SAMN05660299_02025	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rpsF	rpsI	SAMN05660299_02358	SAMN05660299_00875	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsF	rpsJ	SAMN05660299_02358	SAMN05660299_01763	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsF	rpsO	SAMN05660299_02358	SAMN05660299_01166	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rpsF	rpsP	SAMN05660299_02358	SAMN05660299_00154	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsG	rpsB	SAMN05660299_02025	SAMN05660299_00561	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsG	rpsF	SAMN05660299_02025	SAMN05660299_02358	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
rpsG	rpsI	SAMN05660299_02025	SAMN05660299_00875	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsG	rpsJ	SAMN05660299_02025	SAMN05660299_01763	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rpsG	rpsO	SAMN05660299_02025	SAMN05660299_01166	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rpsG	rpsP	SAMN05660299_02025	SAMN05660299_00154	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpsI	rpsB	SAMN05660299_00875	SAMN05660299_00561	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.999
rpsI	rpsF	SAMN05660299_00875	SAMN05660299_02358	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999