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| | rplB | Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (275 aa) |
| | rpsS | Small subunit ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (93 aa) |
| | rplV | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (111 aa) |
| | SDM75929.1 | Hypothetical protein. (154 aa) |
| | rpsC | Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (223 aa) |
| | rplP | Large subunit ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (145 aa) |
| | rpmC | Large subunit ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (66 aa) |
| | rpsQ | Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (84 aa) |
| | rplN | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplX | Large subunit ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (105 aa) |
| | rplE | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (180 aa) |
| | rpsN | Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (89 aa) |
| | rpsH | Small subunit ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa) |
| | rplF | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (180 aa) |
| | rplR | Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (120 aa) |
| | rpsE | Small subunit ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (167 aa) |
| | rpmD | Large subunit ribosomal protein L30. (59 aa) |
| | rplO | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | adk | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (217 aa) |
| | SDM90513.1 | Hypothetical protein. (96 aa) |
| | rpsM | Small subunit ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (122 aa) |
| | rpsK | Small subunit ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa) |
| | rplQ | Large subunit ribosomal protein L17. (112 aa) |
| | SDM90151.1 | Hypothetical protein. (650 aa) |
| | SDM89667.1 | Helicase conserved C-terminal domain-containing protein. (662 aa) |
| | SDM89348.1 | DNA repair protein RadC; Belongs to the UPF0758 family. (210 aa) |
| | SDM89190.1 | ERF superfamily protein. (208 aa) |
| | SDM88630.1 | 3-hydroxyacyl-CoA dehydrogenase. (282 aa) |
| | SDM88530.1 | CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family. (395 aa) |
| | SDM88351.1 | Acyl-CoA dehydrogenase, N-terminal domain. (132 aa) |
| | SDM85778.1 | cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (221 aa) |
| | SDM85207.1 | UDP-galactopyranose mutase. (507 aa) |
| | SDM85047.1 | 4-hydroxy 2-oxovalerate aldolase. (535 aa) |
| | SDM84985.1 | Nucleoside-diphosphate-sugar epimerase. (314 aa) |
| | SDM82517.1 | Amidohydrolase. (393 aa) |
| | SDM82399.1 | Hypothetical protein. (256 aa) |
| | SDM82284.1 | Mg2+-importing ATPase. (865 aa) |
| | SDM82173.1 | Amidohydrolase; Belongs to the peptidase M20A family. (388 aa) |
| | SDM82059.1 | Cupin domain-containing protein. (147 aa) |
| | SDM81473.1 | Small redox-active disulfide protein 2. (80 aa) |
| | SDM81298.1 | Biotin synthase. (369 aa) |
| | SDM79084.1 | Non-specific serine/threonine protein kinase. (870 aa) |
| | SDM21539.1 | Uncharacterized protein family (UPF0051). (374 aa) |
| | SDM21283.1 | Hypothetical protein. (379 aa) |
| | SDM18714.1 | Amidohydrolase. (395 aa) |
| | SDM18485.1 | Glutamate synthase (ferredoxin). (1522 aa) |
| | SDM18336.1 | formyl-CoA transferase; Belongs to the CoA-transferase III family. (392 aa) |
| | SDM18165.1 | DNA repair exonuclease SbcCD nuclease subunit. (421 aa) |
| | bioB | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (326 aa) |
| | SDM18087.1 | Hexokinase. (422 aa) |
| | SDM17780.1 | Predicted DNA-binding protein, UPF0251 family; Belongs to the UPF0251 family. (120 aa) |
| | SDM17645.1 | Hypothetical protein. (256 aa) |
| | SDM17467.1 | PTS system, sucrose-specific IIC component. (459 aa) |
| | SDM17087.1 | Nitrate/nitrite transporter NarK. (445 aa) |
| | SDM17023.1 | Transketolase. (277 aa) |
| | SDM16545.1 | butyryl-CoA:acetate CoA-transferase. (444 aa) |
| | SDM15770.1 | Site-specific DNA-methyltransferase (adenine-specific); Belongs to the N(4)/N(6)-methyltransferase family. (169 aa) |
| | SDM14585.1 | SNF2 family N-terminal domain-containing protein. (462 aa) |
| | SDM14516.1 | Virulence-associated protein E. (799 aa) |
| | SDM13918.1 | Predicted N-acetyltransferase YhbS. (166 aa) |
| | SDM10130.1 | Helix-turn-helix domain-containing protein. (140 aa) |
| | SDM09852.1 | Site-specific DNA-methyltransferase (adenine-specific); Belongs to the N(4)/N(6)-methyltransferase family. (227 aa) |
| | SDM09317.1 | Phage conserved hypothetical protein, C-terminal domain-containing protein. (287 aa) |
| | SDM08979.1 | CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family. (392 aa) |
| | SDM08949.1 | CoA:oxalate CoA-transferase; Belongs to the CoA-transferase III family. (394 aa) |
| | SDM08921.1 | Acyl-CoA dehydrogenase. (379 aa) |
| | SDM07721.1 | Ribonuclease Z. (271 aa) |
| | rpsP | Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (88 aa) |
| | SDM07099.1 | FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase. (342 aa) |
| | SDM06956.1 | Protein arginine kinase. (354 aa) |
| | SDM06651.1 | butyryl-CoA dehydrogenase. (377 aa) |
| | SDM06609.1 | Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. (412 aa) |
| | mrnC | Ribonuclease-3 family protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. (161 aa) |
| | SDM05675.1 | Ribosomal protein L7Ae. (104 aa) |
| | SDM05585.1 | Phosphoesterase RecJ domain-containing protein. (314 aa) |
| | SDM05515.1 | Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family. (314 aa) |
| | SDM05439.1 | ATP-dependent DNA helicase RecQ. (607 aa) |
| | SDM05183.1 | Thioredoxin; Belongs to the thioredoxin family. (105 aa) |
| | SDM05075.1 | Double zinc ribbon. (166 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (397 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (149 aa) |
| | fhs | Formate-tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family. (559 aa) |
| | SDM04205.1 | Formiminotetrahydrofolate cyclodeaminase. (192 aa) |
| | SDM03380.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridinediphosphokinase. (161 aa) |
| | SDM03162.1 | Hypothetical protein. (387 aa) |
| | SDM78745.1 | DNA replication protein DnaC. (258 aa) |
| | ispE | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (289 aa) |
| | SDM21608.1 | Fe-S cluster assembly ATP-binding protein. (248 aa) |
| | SDM21708.1 | DNA topoisomerase-3. (710 aa) |
| | tadA | tRNA(adenine34) deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (150 aa) |
| | rplS | Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (114 aa) |
| | SDM22723.1 | Protein of unknown function. (376 aa) |
| | SDM23190.1 | Arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1). (583 aa) |
| | SDM23665.1 | L-ascorbate metabolism protein UlaG, beta-lactamase superfamily; Belongs to the UPF0173 family. (221 aa) |
| | leuA | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. (580 aa) |
| | SDM24727.1 | Acetyltransferase (GNAT) family protein. (168 aa) |
| | SDM24878.1 | Uncharacterized protein, contains FMN-binding domain. (131 aa) |
| | SDM25209.1 | Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (275 aa) |
| | SDM25833.1 | CoA-transferase family III. (218 aa) |
| | rpsB | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (247 aa) |
| | SDM28014.1 | Acyl-CoA hydrolase. (433 aa) |
| | SDM29260.1 | Hypothetical protein. (844 aa) |
| | SDM29462.1 | Membrane fusion protein, macrolide-specific efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (378 aa) |
| | hpf | Putative sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (174 aa) |
| | SDM30104.1 | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. (232 aa) |
| | ybeY | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (157 aa) |
| | smc | Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1184 aa) |
| | SDM31245.1 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (289 aa) |
| | SDM31314.1 | Electron transfer flavoprotein FAD-binding domain-containing protein. (186 aa) |
| | SDM33917.1 | Replicative DNA helicase. (644 aa) |
| | SDM34591.1 | butyryl-CoA dehydrogenase. (383 aa) |
| | SDM34712.1 | Ethanolamine utilization protein EutS. (126 aa) |
| | SDM34741.1 | Ethanolamine utilization protein EutP; Belongs to the EutP/PduV family. (166 aa) |
| | SDM35340.1 | Putative phosphotransacetylase; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (214 aa) |
| | SDM35372.1 | BMC domain-containing protein. (102 aa) |
| | SDM35412.1 | Carboxysome shell and ethanolamine utilization microcompartment protein CcmK/EutM. (86 aa) |
| | SDM35447.1 | BMC domain-containing protein. (199 aa) |
| | SDM21572.1 | Fe-S cluster assembly protein SufB. (470 aa) |
| | SDN53986.1 | Sugar phosphate permease. (440 aa) |
| | SDN53652.1 | Pyruvate dehydrogenase E1 component alpha subunit. (285 aa) |
| | SDN53606.1 | Pyruvate dehydrogenase E1 component beta subunit. (317 aa) |
| | SDN52973.1 | Acyl-CoA dehydrogenase, C-terminal domain. (47 aa) |
| | SDN52105.1 | Sugar phosphate permease. (431 aa) |
| | SDN50416.1 | S1 RNA binding domain protein. (155 aa) |
| | SDN49290.1 | Hypothetical protein. (368 aa) |
| | SDN48324.1 | Transposase IS200 like. (70 aa) |
| | SDN47722.1 | Pyruvate dehydrogenase E1 component beta subunit. (322 aa) |
| | SDN47671.1 | Pyruvate dehydrogenase E1 component alpha subunit. (328 aa) |
| | SDN44814.1 | Hypothetical protein. (137 aa) |
| | SDN44686.1 | Acetyl esterase/lipase. (312 aa) |
| | SDN44645.1 | Hypothetical protein. (403 aa) |
| | SDN44603.1 | Fe-S cluster assembly ATP-binding protein. (268 aa) |
| | SDN43174.1 | Acyl-CoA dehydrogenase, middle domain. (233 aa) |
| | SDN42670.1 | Electron transfer flavoprotein domain-containing protein. (118 aa) |
| | SDN42171.1 | DNA replication protein DnaC. (256 aa) |
| | ubiX | 4-hydroxy-3-polyprenylbenzoate decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (185 aa) |
| | SDN41096.1 | acyl-CoA hydrolase. (149 aa) |
| | rpmG | Large subunit ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | rplK | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (141 aa) |
| | rplA | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (238 aa) |
| | rplJ | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (185 aa) |
| | rplL | Large subunit ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (121 aa) |
| | SDN38914.1 | Nitrogenase iron protein NifH; Belongs to the NifH/BchL/ChlL family. (256 aa) |
| | SDN38687.1 | Nitrogenase iron protein NifH; Belongs to the NifH/BchL/ChlL family. (253 aa) |
| | SDN37867.1 | Amidohydrolase. (396 aa) |
| | SDN37732.1 | butyryl-CoA:acetate CoA-transferase. (447 aa) |
| | nth | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (213 aa) |
| | SDN36884.1 | Ribulose-bisphosphate carboxylase large chain. (375 aa) |
| | SDN36848.1 | ADP-ribosylglycohydrolase. (269 aa) |
| | SDN36002.1 | 3-hydroxybutyryl-CoA dehydrogenase. (319 aa) |
| | SDN34841.1 | Hypothetical protein. (80 aa) |
| | SDN34790.1 | RNA-directed DNA polymerase. (493 aa) |
| | SDN34672.1 | HlyD family secretion protein. (370 aa) |
| | SDN33554.1 | MFS transporter, ACS family, tartrate transporter. (439 aa) |
| | SDN32243.1 | Cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (297 aa) |
| | SDN32171.1 | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (415 aa) |
| | SDN31152.1 | Hypothetical protein. (240 aa) |
| | rpmI | Large subunit ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (65 aa) |
| | rplT | Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (116 aa) |
| | SDN29412.1 | Diaminopimelate decarboxylase. (417 aa) |
| | SDN29221.1 | Acetyltransferase, GNAT family. (154 aa) |
| | SDN27847.1 | Hypothetical protein; Belongs to the pirin family. (284 aa) |
| | SDN25843.1 | Electron transfer flavoprotein FAD-binding domain-containing protein. (186 aa) |
| | SDN25728.1 | Acyl-CoA dehydrogenase. (379 aa) |
| | SDN25349.1 | Amidohydrolase. (387 aa) |
| | SDN24297.1 | Acyl-CoA dehydrogenase, N-terminal domain. (131 aa) |
| | SDN24159.1 | DNA replication protein DnaC. (270 aa) |
| | SDN23432.1 | Carboxypeptidase PM20D1. (451 aa) |
| | SDN23396.1 | Aminobenzoyl-glutamate utilization protein B. (476 aa) |
| | SDN23352.1 | Amidohydrolase. (396 aa) |
| | rpsR | Small subunit ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (76 aa) |
| | rpsF | Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (94 aa) |
| | hemA | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (436 aa) |
| | SDN20904.1 | cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (222 aa) |
| | SDN20726.1 | 2-iminobutanoate/2-iminopropanoate deaminase. (128 aa) |
| | SDN17627.1 | ADP-ribosylglycohydrolase. (353 aa) |
| | SDN17482.1 | Acyl-CoA hydrolase. (445 aa) |
| | truA | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (262 aa) |
| | SDM75764.1 | tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (324 aa) |
| | rnmV | Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (183 aa) |
| | SDM73506.1 | Cysteine desulfurase. (385 aa) |
| | rpsU | Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (59 aa) |
| | rpsT | Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (596 aa) |
| | rplU | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | rpmA | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (94 aa) |
| | SDM71834.1 | L-fuculose-phosphate aldolase. (199 aa) |
| | SDM71743.1 | Hypothetical protein. (90 aa) |
| | priA | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (787 aa) |
| | SDM70559.1 | CoA-transferase family III; Belongs to the CoA-transferase III family. (500 aa) |
| | SDM68035.1 | Carboxypeptidase PM20D1. (443 aa) |
| | SDM67772.1 | Electron transfer flavoprotein-quinone oxidoreductase. (430 aa) |
| | SDM67736.1 | Ferredoxin like protein. (94 aa) |
| | SDM66743.1 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (448 aa) |
| | ychF | Hypothetical protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (368 aa) |
| | SDM64103.1 | Phosphoribosyl 1,2-cyclic phosphodiesterase. (314 aa) |
| | rpmF | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. (61 aa) |
| | SDM63510.1 | Uridine kinase. (548 aa) |
| | rpsD | Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (195 aa) |
| | SDM62622.1 | Amidohydrolase. (418 aa) |
| | SDM62451.1 | tRNA A37 threonylcarbamoyladenosine dehydratase. (236 aa) |
| | sbcD | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (383 aa) |
| | nfo | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (278 aa) |
| | SDM59895.1 | 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway). (300 aa) |
| | SDM59685.1 | DNA repair protein RadC; Belongs to the UPF0758 family. (222 aa) |
| | SDM59566.1 | Electron transfer flavoprotein alpha subunit apoprotein. (332 aa) |
| | purF | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. (475 aa) |
| | purD | Phosphoribosylamine--glycine ligase; Belongs to the GARS family. (424 aa) |
| | rpsO | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (88 aa) |
| | SDM58019.1 | Hypothetical protein. (399 aa) |
| | SDM57046.1 | DNA topoisomerase-3. (713 aa) |
| | SDM54372.1 | Hypothetical protein. (198 aa) |
| | SDM54185.1 | butyryl-CoA dehydrogenase. (634 aa) |
| | SDM53028.1 | Uncharacterized conserved protein, DUF697 family. (285 aa) |
| | SDM52830.1 | DNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (92 aa) |
| | topA | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (762 aa) |
| | SDM49098.1 | 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (419 aa) |
| | SDM48699.1 | Tex protein YqgF-like domain-containing protein. (137 aa) |
| | SDM47706.1 | NAD+ diphosphatase. (275 aa) |
| | SDM47550.1 | UDP-glucose 4-epimerase. (309 aa) |
| | SDM46410.1 | Putative ATPase. (438 aa) |
| | serC | Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (357 aa) |
| | rpmE | Large subunit ribosomal protein L31; Binds the 23S rRNA. (68 aa) |
| | SDM42918.1 | O-acetylhomoserine (thiol)-lyase. (427 aa) |
| | rplM | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (146 aa) |
| | rpsI | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (130 aa) |
| | cobB | NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily. (240 aa) |
| | SDM41290.1 | Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family. (294 aa) |
| | SDM41086.1 | DNA repair protein RecN (Recombination protein N); May be involved in recombinational repair of damaged DNA. (557 aa) |
| | SDM40923.1 | ATP-dependent RNA helicase DeaD. (423 aa) |
| | SDM40678.1 | Amidohydrolase. (373 aa) |
| | SDM40643.1 | Amidohydrolase. (367 aa) |
| | SDM40229.1 | Amidohydrolase. (398 aa) |
| | SDM39874.1 | Glutamate carboxypeptidase. (388 aa) |
| | SDM39352.1 | Transcriptional activator domain-containing protein. (1065 aa) |
| | SDM39270.1 | Acyl-CoA hydrolase. (445 aa) |
| | SDM38754.1 | Sugar phosphate permease. (402 aa) |
| | SDM36582.1 | Phage replisome organizer, putative, N-terminal region. (263 aa) |
| | SDM36234.1 | Transcriptional regulator, XRE family with cupin sensor. (182 aa) |
| | SDM36099.1 | Methylisocitrate lyase. (292 aa) |
| | SDM36052.1 | 2,3-dimethylmalate lyase. (287 aa) |
| | SDM35725.1 | Carboxysome shell and ethanolamine utilization microcompartment protein CcmL/EutN. (182 aa) |
| | SDM35555.1 | Microcompartment protein PduB. (264 aa) |
| | SDM35517.1 | BMC domain-containing protein. (92 aa) |
| | SDN17060.1 | RNA-binding protein YlmH, contains S4-like domain. (262 aa) |
| | SDN15252.1 | Cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (399 aa) |
| | SDN15185.1 | Dehydrogenase E1 component. (115 aa) |
| | SDN14612.1 | Amidohydrolase; Belongs to the peptidase M20A family. (380 aa) |
| | guaB | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. (485 aa) |
| | rpmB | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. (63 aa) |
| | SDN13841.1 | CBS domain-containing protein. (214 aa) |
| | gyrB | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (639 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (369 aa) |
| | SDN11954.1 | formyl-CoA transferase; Belongs to the CoA-transferase III family. (301 aa) |
| | SDN10866.1 | 4-hydroxy 2-oxovalerate aldolase. (330 aa) |
| | SDN10647.1 | Endoribonuclease L-PSP. (125 aa) |
| | SDN10488.1 | MoxR-like ATPase. (314 aa) |
| | SDN10231.1 | 3-hydroxybutyryl-CoA dehydrogenase. (308 aa) |
| | SDN09337.1 | Transposase IS200 like. (74 aa) |
| | nadD | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (208 aa) |
| | SDN08619.1 | Transketolase. (278 aa) |
| | SDN08433.1 | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. (522 aa) |
| | SDN08065.1 | 3-hydroxybutyryl-CoA dehydrogenase. (285 aa) |
| | SDN07943.1 | Transposase IS200 like. (74 aa) |
| | argC | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily. (315 aa) |
| | argB | N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (307 aa) |
| | SDN06545.1 | 2-dehydro-3-deoxygluconokinase. (314 aa) |
| | rpsL | Small subunit ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (124 aa) |
| | rpsG | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | SDN05427.1 | methylated-DNA-[protein]-cysteine S-methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (192 aa) |
| | SDN05235.1 | Ca2+-transporting ATPase. (892 aa) |
| | SDN04402.1 | YoaP-like. (152 aa) |
| | SDN03674.1 | Transposase IS200 like. (43 aa) |
| | SDN02788.1 | Transketolase. (275 aa) |
| | SDN02678.1 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (138 aa) |
| | SDN02486.1 | Thioredoxin; Belongs to the thioredoxin family. (107 aa) |
| | SDN02195.1 | Acyl-CoA dehydrogenase. (379 aa) |
| | SDN01388.1 | Hypothetical protein. (973 aa) |
| | SDM99463.1 | AAA domain (dynein-related subfamily). (371 aa) |
| | SDM99149.1 | Amidohydrolase. (407 aa) |
| | SDM97533.1 | L-ascorbate metabolism protein UlaG, beta-lactamase superfamily. (234 aa) |
| | SDM97200.1 | Cupin domain-containing protein. (113 aa) |
| | recR | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (196 aa) |
| | SDM96778.1 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (105 aa) |
| | SDM96693.1 | Amidohydrolase; Belongs to the peptidase M20A family. (435 aa) |
| | SDM96245.1 | FAD dependent oxidoreductase. (74 aa) |
| | SDM94764.1 | Tetratricopeptide repeat-containing protein. (217 aa) |
| | SDM93665.1 | Cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (288 aa) |
| | SDM93584.1 | Protein of unknown function. (174 aa) |
| | SDM93550.1 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. (307 aa) |
| | SDM92702.1 | hydroxymethylglutaryl-CoA lyase. (245 aa) |
| | rpsJ | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa) |
| | rplC | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (212 aa) |
| | rplD | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. (207 aa) |
| | rplW | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (94 aa) |
