(32 nodes) 4Fe-4S ferredoxin-type, iron-sulphur binding domain network (Megasphaera paucivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDN41951.1	Pyruvate ferredoxin oxidoreductase delta subunit. (101 aa)
	SDM04580.1	Pyruvate-ferredoxin/flavodoxin oxidoreductase. (1171 aa)
	SDM04823.1	Hypothetical protein. (374 aa)
	SDM16658.1	Iron only hydrogenase large subunit, C-terminal domain. (412 aa)
	SDM25413.1	Pyruvate ferredoxin oxidoreductase delta subunit. (97 aa)
	SDM29764.1	NADH-quinone oxidoreductase subunit G. (486 aa)
	SDM35585.1	Pyruvate formate lyase activating enzyme. (310 aa)
	SDM35762.1	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit. (440 aa)
	SDM66532.1	Epoxyqueuosine reductase QueG (queuosine biosynthesis). (290 aa)
	SDM67920.1	Iron-sulfur cluster-binding protein. (718 aa)
	SDM72217.1	NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit. (253 aa)
	SDM85816.1	4Fe-4S dicluster domain-containing protein. (246 aa)
	rnfB	Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (281 aa)
	rnfC	Electron transport complex protein RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. (459 aa)
	SDM88851.1	Pyruvate ferredoxin oxidoreductase delta subunit. (102 aa)
	SDM93435.1	NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein. (625 aa)
	SDM93475.1	NAD(P)-dependent iron-only hydrogenase catalytic subunit. (574 aa)
	SDM97241.1	Ferredoxin. (61 aa)
	SDM98948.1	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase. (860 aa)
	SDM99070.1	4Fe-4S binding domain-containing protein. (283 aa)
	SDM99784.1	4Fe-4S dicluster domain-containing protein. (54 aa)
	SDN00125.1	Fe-S oxidoreductase. (761 aa)
	SDN17551.1	Indolepyruvate ferredoxin oxidoreductase alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (592 aa)
	SDN19392.1	Pyruvate-ferredoxin/flavodoxin oxidoreductase. (1171 aa)
	SDN20761.1	Anaerobic sulfite reductase subunit A. (340 aa)
	SDN20827.1	Anaerobic sulfite reductase subunit C; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (324 aa)
	SDN21251.1	4Fe-4S binding domain-containing protein. (274 aa)
	SDN22311.1	Pyruvate-ferredoxin/flavodoxin oxidoreductase. (1173 aa)
	SDN33263.1	Pyruvate-ferredoxin/flavodoxin oxidoreductase. (1176 aa)
	SDN37963.1	Pyruvate-ferredoxin/flavodoxin oxidoreductase. (1173 aa)
	SDN39900.1	Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (287 aa)
	SDN43134.1	Pyruvate-ferredoxin/flavodoxin oxidoreductase. (1173 aa)

Your Current Organism:

Megasphaera paucivorans

NCBI taxonomy Id: 349095
Other names: DSM 16981, M. paucivorans, Megasphaera paucivorans Juvonen and Suihko 2006, VTT E-032341

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDM04580.1	SDM04823.1	SAMN05660299_00069	SAMN05660299_00077	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Hypothetical protein.	0.851
SDM04580.1	SDM16658.1	SAMN05660299_00069	SAMN05660299_00347	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Iron only hydrogenase large subunit, C-terminal domain.	0.459
SDM04580.1	SDM25413.1	SAMN05660299_00069	SAMN05660299_00536	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Pyruvate ferredoxin oxidoreductase delta subunit.	0.999
SDM04580.1	SDM29764.1	SAMN05660299_00069	SAMN05660299_00613	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	NADH-quinone oxidoreductase subunit G.	0.459
SDM04580.1	SDM35762.1	SAMN05660299_00069	SAMN05660299_00751	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit.	0.867
SDM04580.1	SDM66532.1	SAMN05660299_00069	SAMN05660299_01314	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Epoxyqueuosine reductase QueG (queuosine biosynthesis).	0.758
SDM04580.1	SDM67920.1	SAMN05660299_00069	SAMN05660299_01350	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Iron-sulfur cluster-binding protein.	0.943
SDM04580.1	SDM72217.1	SAMN05660299_00069	SAMN05660299_01426	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit.	0.928
SDM04580.1	SDM85816.1	SAMN05660299_00069	SAMN05660299_01651	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	4Fe-4S dicluster domain-containing protein.	0.859
SDM04580.1	SDM88851.1	SAMN05660299_00069	SAMN05660299_01696	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Pyruvate ferredoxin oxidoreductase delta subunit.	0.934
SDM04580.1	SDM93435.1	SAMN05660299_00069	SAMN05660299_01784	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.	0.996
SDM04580.1	SDM93475.1	SAMN05660299_00069	SAMN05660299_01785	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	NAD(P)-dependent iron-only hydrogenase catalytic subunit.	0.943
SDM04580.1	SDM97241.1	SAMN05660299_00069	SAMN05660299_01857	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Ferredoxin.	0.891
SDM04580.1	SDM99784.1	SAMN05660299_00069	SAMN05660299_01914	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	4Fe-4S dicluster domain-containing protein.	0.867
SDM04580.1	SDN00125.1	SAMN05660299_00069	SAMN05660299_01922	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Fe-S oxidoreductase.	0.920
SDM04580.1	SDN17551.1	SAMN05660299_00069	SAMN05660299_02264	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Indolepyruvate ferredoxin oxidoreductase alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.	0.950
SDM04580.1	SDN19392.1	SAMN05660299_00069	SAMN05660299_02301	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	0.999
SDM04580.1	SDN20761.1	SAMN05660299_00069	SAMN05660299_02324	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Anaerobic sulfite reductase subunit A.	0.879
SDM04580.1	SDN20827.1	SAMN05660299_00069	SAMN05660299_02326	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	Anaerobic sulfite reductase subunit C; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.895
SDM04580.1	SDN21251.1	SAMN05660299_00069	SAMN05660299_02338	Pyruvate-ferredoxin/flavodoxin oxidoreductase.	4Fe-4S binding domain-containing protein.	0.758