STRINGSTRING
rfbD-2 rfbD-2 rfbB-3 rfbB-3 LRC537 LRC537 LRC542 LRC542 LRC543 LRC543 LRC544 LRC544 LRC545 LRC545 LRC547 LRC547 LRC548 LRC548 LRC549 LRC549 LRC550 LRC550 LRC551 LRC551 rfbB-2 rfbB-2 rfbA-2 rfbA-2 galT galT rfbA-3 rfbA-3 glmS glmS pgm-1 pgm-1 rfbA-4 rfbA-4 galE-2 galE-2 RCIX1460 RCIX1460 RCIX1878 RCIX1878 RCIX192 RCIX192 RCIX195 RCIX195 RCIX196 RCIX196 rfbA-1 rfbA-1 rfbD-1 rfbD-1 rfbB-1 rfbB-1 rfbC rfbC gmd gmd RCIX212 RCIX212 RCIX213 RCIX213 RCIX214 RCIX214 RCIX216 RCIX216 RCIX217 RCIX217 RCIX218 RCIX218 RCIX219 RCIX219 RCIX221 RCIX221 ugd ugd pgm-2 pgm-2 RCIX2732 RCIX2732 RCIX2739 RCIX2739 rfbM rfbM RCIX362 RCIX362 RCIX363 RCIX363 eif2b2 eif2b2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rfbD-2dTDP-4-dehydrorhamnose reductase. (289 aa)
rfbB-3dTDP-glucose 4,6-dehydratase; Identical to orf2 of fosmid clone 3D10mr4 gene synonyms: rmlB, cpsN. (312 aa)
LRC537Glycosyltransferase (family 2). (299 aa)
LRC542Glycosyltransferase (group 1). (380 aa)
LRC543Glycosyltransferase (group 1). (348 aa)
LRC544Glycosyltransferase (group 1). (382 aa)
LRC545Putative glycosyltransferase (group 1). (371 aa)
LRC547Glycosyltransferase (group 1). (349 aa)
LRC548Putative glycosyltransferase (family 2). (293 aa)
LRC549Glycosyltransferase (group 1). (410 aa)
LRC550Putative lipopolysaccharide biosynthesis protein. (490 aa)
LRC551Putative glycosyltransferase (group 1). (391 aa)
rfbB-2Putative dTDP-glucose 4-6-dehydratase. (318 aa)
rfbA-2Putative glucose-1-phosphate thymidylyltransferase. (332 aa)
galTGalactose-1-phosphate uridylyltransferase. (324 aa)
rfbA-3Glucose-1-phosphate thymidylyltransferase. (400 aa)
glmSGlutamine-fructose-6-phosphate amidotransferase,isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. (608 aa)
pgm-1Phosphoglucomutase/phosphomannomutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. (438 aa)
rfbA-4Glucose-1-phosphate thymidylyltransferase. (408 aa)
galE-2Putative UDP-glucose 4-epimerase. (309 aa)
RCIX1460Glycosyltransferase (family 2). (302 aa)
RCIX1878Putative glycosyltransferase (group 1). (435 aa)
RCIX192Glucosyltransferase (family 2). (316 aa)
RCIX195Glycosyltransferase (group 1). (386 aa)
RCIX196Glucosyltransferase (family 2). (230 aa)
rfbA-1Glucose-1-phosphate thymidylyltransferase. (242 aa)
rfbD-1dTDP-4-dehydrorhamnose reductase. (264 aa)
rfbB-1dTDP-glucose 4,6-dehydratase. (320 aa)
rfbCdTDP-4-dehydrorhamnose 3,5 epimerase. (157 aa)
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (333 aa)
RCIX212Putative glycosyltransferase (group 1). (549 aa)
RCIX213Predicted glycosyltransferase (group 1). (1015 aa)
RCIX214Predicted SAM-dependent methyltransferase. (460 aa)
RCIX216Putative ABC-type transport system, ATPase component. (430 aa)
RCIX217Putative ABC-type transport system, permease component (ABC-2 family). (264 aa)
RCIX218Putative glycosyltransferase (group 1). (392 aa)
RCIX219Predicted glucosyltransferase (group 1). (353 aa)
RCIX221Glycosyltransferase (group 1). (360 aa)
ugdUDP-glucose 6-dehydrogenase. (429 aa)
pgm-2Phosphoglucomutase/phosphomannomutase; Belongs to the phosphohexose mutase family. (443 aa)
RCIX2732Putative glycosyltransferase (family 2). (234 aa)
RCIX2739Conserved GTP-binding protein. (522 aa)
rfbMMannose-1-phosphate guanylyltransferase. (391 aa)
RCIX362Nucleotidyltransferase family protein. (231 aa)
RCIX363Putative sugar-phosphate adenylyltransferase. (331 aa)
eif2b2Translation initiation factor 2B, subunit 2; Belongs to the eIF-2B alpha/beta/delta subunits family. (312 aa)
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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