STRINGSTRING
LRC190 LRC190 LRC410 LRC410 LRC516 LRC516 RCIX1113 RCIX1113 RCIX1200 RCIX1200 tnp-17 tnp-17 RCIX1518 RCIX1518 tnp-2 tnp-2 RCIX1997 RCIX1997 RCIX1999 RCIX1999 RCIX2146 RCIX2146 tnp-22 tnp-22 RCIX240 RCIX240 tnp-24 tnp-24 RCIX412 RCIX412 RRC34 RRC34 RRC479 RRC479
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LRC190Hypothetical protein. (692 aa)
LRC410Hypothetical protein. (250 aa)
LRC516Hypothetical protein. (260 aa)
RCIX1113Conserved hypothetical protein. (347 aa)
RCIX1200Hypothetical protein. (750 aa)
tnp-17Putative transposase (IS4). (328 aa)
RCIX1518Predicted oligopeptide transporter (OPT superfamily). (553 aa)
tnp-2Predicted transposase (IS4). (328 aa)
RCIX1997Hypothetical protein. (322 aa)
RCIX1999Hypothetical protein. (1632 aa)
RCIX2146Hypothetical protein. (447 aa)
tnp-22Predicted transposase (IS4). (328 aa)
RCIX240Predicted serine/threonine kinase. (373 aa)
tnp-24Predicted transposase (IS4). (328 aa)
RCIX412Hypothetical protein; Similar to RCIX409 and RCIX414. (807 aa)
RRC34Hypothetical protein. (1126 aa)
RRC479Hypothetical protein. (196 aa)
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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