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| | LRC112 | Conserved hypothetical protein; Belongs to the UPF0145 family. (120 aa) |
| | LRC128 | Predicted regulator of chromosome condensation. (490 aa) |
| | LRC129 | Predicted methyltransferase (UbiE/COQ5 family). (299 aa) |
| | LRC131 | Thioredoxin-like protein. (195 aa) |
| | top6A-1 | Type II DNA topoisomerase VI, subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity; Belongs to the TOP6A family. (366 aa) |
| | top6B-1 | Type II DNA topoisomerase VI, subunit B; Relaxes both positive and negative superturns and exhibits a strong decatenase activity. (541 aa) |
| | rps28e | 30S ribosomal protein S28E; Belongs to the eukaryotic ribosomal protein eS28 family. (70 aa) |
| | rpl7ae | 50S ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (123 aa) |
| | polB-1 | DNA-directed DNA polymerase B. (918 aa) |
| | LRC159 | Conserved hypothetical protein. (181 aa) |
| | LRC222 | Conserved hypothetical Fe-S cluster-binding protein, N-terminal fragment. (107 aa) |
| | LRC223 | Conserved hypothetical Fe-S cluster-binding protein, C-terminal fragment. (202 aa) |
| | LRC226 | Thioredoxin-like protein. (174 aa) |
| | LRC23 | Putative ATPase (KaiC family). (254 aa) |
| | LRC235 | Conserved hypothetical protein. (162 aa) |
| | rpl12p | Putative 50S ribosomal protein L12P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (103 aa) |
| | rpl10e | 50S ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (304 aa) |
| | LRC251 | Conserved hypothetical protein. (391 aa) |
| | rpl1p | 50S ribosomal protein L1P; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (213 aa) |
| | LRC263 | Hypothetical protein. (338 aa) |
| | LRC268 | Predicted N6 adenine-specific DNA methyltransferase. (225 aa) |
| | rpl11p | 50S ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (158 aa) |
| | tfeA | Transcription initiation factor IIE, alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing [...] (171 aa) |
| | rpl26e | 50S ribosomal protein L26E; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. (164 aa) |
| | LRC289 | Conserved hypothetical protein; Identical to orf4 of fosmid clone 3D10mr4. (181 aa) |
| | rps27e | 30S ribosomal protein S27E. (58 aa) |
| | rpl44e | 50S ribosomal protein L44E; Binds to the 23S rRNA. (93 aa) |
| | priA | DNA primase, small subunit; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. [...] (400 aa) |
| | LRC3 | ATP-dependent RNA helicase. (746 aa) |
| | LRC300 | Hypothetical protein; Identical to orf11 of fosmid clone 3D10mr4. (201 aa) |
| | LRC345 | ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (497 aa) |
| | LRC353 | mRNA 3-end processing factor. (432 aa) |
| | rpl30e | 50S ribosomal protein L30E; Belongs to the eukaryotic ribosomal protein eL30 family. (101 aa) |
| | rps12p | 30S ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (142 aa) |
| | rps7p | 30S ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (206 aa) |
| | rps10p | 30S ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (104 aa) |
| | rfcS | Replication factor C (clamp loader), small subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily. (322 aa) |
| | LRC392 | Fumarylacetoacetate hydrolase family protein. (242 aa) |
| | LRC400 | Conserved hypothetical protein; Belongs to the MEMO1 family. (264 aa) |
| | rps2p | 30S ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. (207 aa) |
| | rps9p | 30S ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (136 aa) |
| | rpl13p | 50S ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (139 aa) |
| | rpl18e | 50S ribosomal protein L18E; Belongs to the eukaryotic ribosomal protein eL18 family. (120 aa) |
| | rps6e | 30S ribosomal protein S6E; Belongs to the eukaryotic ribosomal protein eS6 family. (142 aa) |
| | LRC45 | Conserved hypothetical protein. (210 aa) |
| | rad25 | Putative DNA repair protein 25. (446 aa) |
| | dnaK | Chaperonin Hsp70; Acts as a chaperone. (623 aa) |
| | LRC473 | Predicted RecA-family ATPase. (241 aa) |
| | LRC482 | Conserved hypothetical protein. (225 aa) |
| | mutSb | Putative DNA mismatch repair protein, N-terminal fragment. (565 aa) |
| | LRC529 | Pedicted SAM-dependent methyltransferase. (211 aa) |
| | rps15p | 30S ribosomal protein S15P. (152 aa) |
| | mutSa | Putative DNA mismatch repair protein, C-terminal fragment. (122 aa) |
| | LRC65 | Conserved hypothetical protein. (157 aa) |
| | LRC70 | Putative DNA/RNA helicase (SNF2 family). (1042 aa) |
| | LRC94 | Hypothetical protein. (191 aa) |
| | RCIX1018 | Conserved hypothetical GTP-binding protein. (355 aa) |
| | nac | Putative transcription factor (alpha-NAC related); Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. (131 aa) |
| | hmgA | 3-hydroxy-3-methylglutaryl-coenzyme a reductase (hmg-coa reductase); Belongs to the HMG-CoA reductase family. (408 aa) |
| | rplX | 50S ribosomal protein LX. (58 aa) |
| | rpl31e | 50S ribosomal protein L31E; Belongs to the eukaryotic ribosomal protein eL31 family. (91 aa) |
| | rps19e | 30S ribosomal protein S19E; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (146 aa) |
| | RCIX107 | Predicted ATPase (RecA family); Similarities with kaiC (circadian clock regulatory protein kinase). (491 aa) |
| | top6B-2 | Type II DNA topoisomerase VI, subunit B; Relaxes both positive and negative superturns and exhibits a strong decatenase activity. (556 aa) |
| | top6A-2 | Type II DNA topoisomerase VI, subunit A. (375 aa) |
| | mpg | Putative 3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family. (200 aa) |
| | RCIX1108 | Conserved hypothetical protein. (167 aa) |
| | cdc6-1 | Cell division cycle protein 6; Involved in regulation of DNA replication. (415 aa) |
| | cdc48-3 | Cell division cycle protein 48. (758 aa) |
| | RCIX115 | Conserved hypothetical protein; Similarities with kaiC (circadian clock regulatory protein kinase) and Rad55 (RecA-superfamily ATPase implicated in signal transduction). (231 aa) |
| | RCIX117 | Conserved hypothetical protein; Similarities with kaiC (circadian clock regulatory protein kinase) and Rad55 (RecA-superfamily ATPase implicated in signal transduction). (289 aa) |
| | polX | DNA-directed DNA polymerase X. (574 aa) |
| | RCIX1210 | RNase L inhibitor. (590 aa) |
| | xthA | Exodeoxyribonuclease III; Gene synonym: exoA. (257 aa) |
| | tbpE | TATA-box binding protein E; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. (188 aa) |
| | RCIX1257 | Conserved hypothetical protein. (138 aa) |
| | RCIX1263 | Putative type III restriction-modification system, restriction subunit. (792 aa) |
| | RCIX1272 | Conserved hypothetical protein. (336 aa) |
| | RCIX1310 | 4Fe-4S ferredoxin-domain protein. (385 aa) |
| | RCIX1333 | Conserved hypothetical protein. (250 aa) |
| | RCIX1335 | Predicted regulator of chromosome condensation. (451 aa) |
| | RCIX1340 | Putative metallo-beta-lactamase. (247 aa) |
| | RCIX1428 | Conserved hypothetical protein. (285 aa) |
| | rpl40e | 50S ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family. (48 aa) |
| | RCIX1585 | Predicted regulator of chromosome condensation. (447 aa) |
| | RCIX1603 | Predicted SAM-dependent methyltransferase. (174 aa) |
| | nifH-1 | Nitrogenase iron protein (nitrogenase reductase); The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. (274 aa) |
| | RCIX1654 | Glutaredoxin-like protein; Does not function as a glutathione-disulfide oxidoreductase in the presence of glutathione and glutathione reductase. Has low thioredoxin activity in vitro. (79 aa) |
| | hpyA1 | Putative archaeal histone A1 (H4 family). (70 aa) |
| | RCIX1761 | Predicted regulator of chromosome condensation. (439 aa) |
| | recQ | ATP-dependent DNA helicase. (605 aa) |
| | rfcL | Replication factor C, large subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. (553 aa) |
| | cdc6-2 | Cell division cycle protein 6; Involved in regulation of DNA replication. (375 aa) |
| | RCIX1862 | Conserved GTP-binding protein (Ras family). (211 aa) |
| | RCIX1863 | Conserved hypothetical CBS domain protein. (193 aa) |
| | RCIX1864 | Conserved hypothetical CBS domain protein. (260 aa) |
| | RCIX1866 | Conserved hypothetical CBS domain protein. (324 aa) |
| | RCIX1867 | Conserved hypothetical CBS domain protein. (283 aa) |
| | RCIX1868 | Conserved hypothetical CBS domain protein. (259 aa) |
| | RCIX1934 | Conserved hypothetical protein. (493 aa) |
| | RCIX1966 | Conserved hypothetical protein. (298 aa) |
| | rpl10e-2 | 50S ribosomal protein L10E; Belongs to the universal ribosomal protein uL16 family. (172 aa) |
| | nifH-2 | Nitrogenase iron protein (nitrogenase reductase). (272 aa) |
| | cbiX-1 | Putative sirohydrochlorin cobaltochelatase; Catalyzes the insertion of Co(2+) into sirohydrochlorin as part of the anaerobic pathway to cobalamin biosynthesis. Involved in the biosynthesis of the unique nickel-containing tetrapyrrole coenzyme F430, the prosthetic group of methyl-coenzyme M reductase (MCR), which plays a key role in methanogenesis and anaerobic methane oxidation. Catalyzes the insertion of Ni(2+) into sirohydrochlorin to yield Ni- sirohydrochlorin. (133 aa) |
| | RCIX2018 | Conserved hypothetical protein. (121 aa) |
| | RCIX209 | Conserved hypothetical protein. (193 aa) |
| | RCIX210 | Conserved hypothetical protein. (384 aa) |
| | RCIX2110 | Conserved hypothetical protein. (79 aa) |
| | rpl15e | 50S ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family. (196 aa) |
| | RCIX2122 | Conserved hypothetical protein. (231 aa) |
| | rpl37ae | 50S ribosomal protein L37AE; Binds to the 23S rRNA. (96 aa) |
| | RCIX214 | Predicted SAM-dependent methyltransferase. (460 aa) |
| | kptA | Putative RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. (211 aa) |
| | RCIX2178 | Predicted SAM-dependent methyltransferase. (239 aa) |
| | RCIX2198 | Hypothetical protein. (876 aa) |
| | RCIX2215 | Conserved hypothetical protein. (250 aa) |
| | rbcL | Ribulose 1,5-bisphosphate carboxylase (RuBisCO),large subunit. (412 aa) |
| | truA | tRNA pseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family. (266 aa) |
| | RCIX2249 | ATPase (AAA superfamily); Belongs to the AAA ATPase family. (429 aa) |
| | smc | Chromosome segregation/partition protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1173 aa) |
| | eif2b1 | Translation initiation factor 2B, subunit 1; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the EIF-2B alpha/beta/delta subunits family. MtnA subfamily. (342 aa) |
| | rps3ae | 30S ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family. (225 aa) |
| | repD | Putative ATP-dependent DNA-repair helicase. (721 aa) |
| | tfs | Archaeal transcription factor S; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (106 aa) |
| | priB | DNA primase, large subunit; Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair. (366 aa) |
| | topA-1 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (767 aa) |
| | RCIX2327 | Conserved hypothetical protein. (317 aa) |
| | hmfA | Archaeal histone A. (69 aa) |
| | pus10 | Conserved hypothetical protein; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs. (440 aa) |
| | rpl21e | 50S ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family. (99 aa) |
| | RCIX2394 | Putative ATP-dependent helicase. (864 aa) |
| | ugd | UDP-glucose 6-dehydrogenase. (429 aa) |
| | RCIX2412 | Hypothetical protein. (350 aa) |
| | gatB-1 | glutamyl-tRNA(Gln) amidotransferase, subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (485 aa) |
| | topA-2 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (728 aa) |
| | RCIX2438 | Predicted SAM-dependent methyltransferase. (251 aa) |
| | RCIX2456 | Putative transcription factor. (166 aa) |
| | adk-1 | Putative adenylate kinase; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Belongs to the adenylate kinase family. AK6 subfamily. (168 aa) |
| | albA | DNA/RNA-binding protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family. (96 aa) |
| | RCIX2472 | Predicted redox-active protein (CxxC motives). (153 aa) |
| | RCIX2491 | Hypothetical protein. (317 aa) |
| | RCIX2497 | Conserved hypothetical protein. (225 aa) |
| | RCIX2501 | Predicted endonuclease/exonuclease. (294 aa) |
| | RCIX2525 | Conserved hypothetical protein. (1055 aa) |
| | dcm | C-5 cytosine-specific DNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (419 aa) |
| | RCIX2536 | Putative DNA glycosylase. (212 aa) |
| | rpl3p | 50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (337 aa) |
| | rpl4p | 50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel. (253 aa) |
| | rpl23p | 50S ribosomal protein L23P; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (82 aa) |
| | rpl2p | 50S ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (238 aa) |
| | rps19p | 30S ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (140 aa) |
| | rpl22p | 50S ribosomal protein L22P; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (153 aa) |
| | rps3p | 30S ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (279 aa) |
| | rpl29p | 50S ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. (71 aa) |
| | rps17p | 30S ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (111 aa) |
| | rpl14p | 50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa) |
| | rpl24p | 50S ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (123 aa) |
| | rps4e | 30S ribosomal protein S4E; Belongs to the eukaryotic ribosomal protein eS4 family. (234 aa) |
| | rpl5p | 50S ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (170 aa) |
| | rps14p | 30S ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles. (50 aa) |
| | rps8p | 30S ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa) |
| | rpl6p | 50S ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa) |
| | rpl32e | Putative 50S ribosomal protein L32E. (221 aa) |
| | rpl19e | 50S ribosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (152 aa) |
| | rpl18p | 50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (188 aa) |
| | rps5p | 30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. (212 aa) |
| | rpl30p | 50S ribosomal protein L30P. (153 aa) |
| | rpl15p | 50S ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | truB | Putative tRNA pseudouridine synthase B; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. (328 aa) |
| | rps13p | Putative 30S ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (224 aa) |
| | rps4p | 30S ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (205 aa) |
| | rps11p | 30S ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (132 aa) |
| | rps8e | 30S ribosomal protein S8E. (125 aa) |
| | RCIX2705 | Putative ATPase (AAA superfamily). (292 aa) |
| | trm1 | N(2),N(2)-dimethylguanosine tRNA methyltransferase; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. (365 aa) |
| | RCIX2726 | Conserved hypothetical protein. (644 aa) |
| | polB-3 | Putative DNA-directed DNA polymerase B. (770 aa) |
| | RCIX28 | Putative hydrolase (haloacid dehalogenase superfamily). (243 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. (481 aa) |
| | RCIX292 | Conserved hypothetical protein. (198 aa) |
| | RCIX293 | Conserved hypothetical protein. (401 aa) |
| | RCIX305 | dCMP deaminase. (167 aa) |
| | ptpS | Putative 6-pyruvoyl-tetrahydropterin synthase. (112 aa) |
| | RCIX360 | Thioredoxin-like protein. (169 aa) |
| | hmgA-2 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family. (428 aa) |
| | RCIX407 | Conserved hypothetical protein. (307 aa) |
| | RCIX455 | Conserved hypothetical protein. (241 aa) |
| | RCIX492 | Predicted regulator of chromosome condensation. (441 aa) |
| | hel308 | Putative ski2-type helicase; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks. (740 aa) |
| | gyrA | Type II DNA topoisomerase II (gyrase), subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an [...] (826 aa) |
| | RCIX580 | Putative methyltransferase (UbiE/COQ5 family). (220 aa) |
| | gyrB | Type II DNA topoisomerase II (gyrase), subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an [...] (635 aa) |
| | fen | Flap structure-specific endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair [...] (340 aa) |
| | rps27ae | 30S ribosomal protein S27AE; Belongs to the eukaryotic ribosomal protein eS31 family. (44 aa) |
| | RCIX628 | Putative SAM-dependent methyltransferase. (228 aa) |
| | cdc48-1 | Putative cell division cycle protein 48. (942 aa) |
| | cdc48-2 | Cell division cycle protein 48. (743 aa) |
| | rnz | RNase Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (304 aa) |
| | RCIX72 | Conserved hypothetical protein. (279 aa) |
| | rps17e | 30s ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family. (65 aa) |
| | pycA | Putative pyruvate carboxylase, subunit A. (722 aa) |
| | ppiB | Peptidyl-prolyl cis-trans isomerase B (cyclophilin type). (142 aa) |
| | RCIX759 | Hypothetical protein. (189 aa) |
| | RCIX807 | Predicted regulator of chromosome condensation; Similar to RCIX819. (445 aa) |
| | RCIX819 | Predicted regulator of chromosome condensation; Similar to RCIX807. (478 aa) |
| | ubiE | Ubiquinone/menaquinone biosynthesis methyltransferase. (270 aa) |
| | RCIX894 | Putative GTP-binding protein (Ras GTPase family). (174 aa) |
| | RCIX900 | Hypothetical protein. (162 aa) |
| | hemA | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (427 aa) |
| | cysG | uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. (248 aa) |
| | lysM | Putative methyltransferase. (201 aa) |
| | RCIX924 | Putative hydrolase (HAD superfamily). (245 aa) |
| | RCIX925 | Putative hydrolase (HAD superfamily). (258 aa) |
| | RCIX927 | Predicted endonuclease III. (307 aa) |
| | RCIX977 | Putative metal-dependent phosphohydrolase (HD superfamily). (431 aa) |
| | cbiX-2 | Putative sirohydrochlorin cobaltochelatase. (119 aa) |
| | RRC12 | Conserved hypothetical protein. (220 aa) |
| | pdhB | Pyruvate dehydrogenase complex E1, transketolase beta subunit. (325 aa) |
| | pdhA | Pyruvate dehydrogenase complex E1, transketolase alpha subunit. (359 aa) |
| | endA | tRNA-splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp. (353 aa) |
| | RRC248 | Hypothetical protein. (425 aa) |
| | RRC278 | Hypothetical protein. (453 aa) |
| | RRC290 | Hypothetical protein. (280 aa) |
| | RRC295 | Predicted ferredoxin:thioredoxin reductase subunit. (115 aa) |
| | nfo | Putative endonuclease IV. (265 aa) |
| | RRC355 | Conserved hypothetical protein. (339 aa) |
| | polB-4 | DNA-directed DNA polymerase B. (798 aa) |
| | RRC405 | Conserved hypothetical protein. (376 aa) |
| | RRC430 | ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (451 aa) |
| | ubiX | Putative aromatic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (185 aa) |
| | RRC451 | Putative metal-dependent phosphohydrolase (HD superfamily). (396 aa) |
| | RRC454 | Conserved hypothetical protein. (173 aa) |
| | RRC49 | Putative iron-containing alcohol dehydrogenase. (388 aa) |
| | RRC51 | Hypothetical protein. (396 aa) |
| | RRC53 | Predicted cobalamin biosynthesis protein (CbiX-like). (305 aa) |
| | aat-4 | Putative aspartate aminotransferase. (381 aa) |
| | RRC63 | Predicted endonuclease III. (243 aa) |
| | RRC95 | Predicted DNA repair exonuclease (Rad32/Mre11-like). (471 aa) |
