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rpl7ae rpl7ae LRC159 LRC159 LRC289 LRC289 rpl44e rpl44e rpl30e rpl30e flpA flpA LRC386 LRC386 eif6 eif6 rpl31e rpl31e rps19e rps19e RCIX2018 RCIX2018 RCIX2110 RCIX2110 srp19 srp19 rpl15e rpl15e rnp3 rnp3 rnp2 rnp2 rpl37ae rpl37ae rps3ae rps3ae RCIX2282 RCIX2282 srp54 srp54 rps19p rps19p rps3p rps3p RCIX2550 RCIX2550 rnp1 rnp1 rpl32e rpl32e rpl19e rpl19e rps5p rps5p truB truB rps4p rps4p rps17e rps17e RRC313 RRC313 RRC337 RRC337 pdxS pdxS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl7ae50S ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (123 aa)
LRC159Conserved hypothetical protein. (181 aa)
LRC289Conserved hypothetical protein; Identical to orf4 of fosmid clone 3D10mr4. (181 aa)
rpl44e50S ribosomal protein L44E; Binds to the 23S rRNA. (93 aa)
rpl30e50S ribosomal protein L30E; Belongs to the eukaryotic ribosomal protein eL30 family. (101 aa)
flpAFibrillarin-like pre-rRNA processing protein; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. (220 aa)
LRC386Nop56-like pre-mRNA processing protein. (297 aa)
eif6Translation initiation factor 6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. (221 aa)
rpl31e50S ribosomal protein L31E; Belongs to the eukaryotic ribosomal protein eL31 family. (91 aa)
rps19e30S ribosomal protein S19E; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (146 aa)
RCIX2018Conserved hypothetical protein. (121 aa)
RCIX2110Conserved hypothetical protein. (79 aa)
srp19Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP. (97 aa)
rpl15e50S ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family. (196 aa)
rnp3Putative RNase P, component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. (240 aa)
rnp2Putative RNase P, component 2; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family. (173 aa)
rpl37ae50S ribosomal protein L37AE; Binds to the 23S rRNA. (96 aa)
rps3ae30S ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family. (225 aa)
RCIX2282Conserved hypothetical protein. (164 aa)
srp54Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (444 aa)
rps19p30S ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (140 aa)
rps3p30S ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (279 aa)
RCIX2550Translation initiation factor (SUI1 family); Belongs to the SUI1 family. (101 aa)
rnp1Putative RNase P, component 1; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family. (90 aa)
rpl32ePutative 50S ribosomal protein L32E. (221 aa)
rpl19e50S ribosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (152 aa)
rps5p30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. (212 aa)
truBPutative tRNA pseudouridine synthase B; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. (328 aa)
rps4p30S ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (205 aa)
rps17e30s ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family. (65 aa)
RRC313Translation initiation factor (SUI1 family); Belongs to the SUI1 family. (101 aa)
RRC337Predicted protein kinase. (294 aa)
pdxSPutative pyridoxal biosynthesis lyase; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (298 aa)
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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