(15 nodes) Arginine metabolic process, and Putrescine metabolic process network (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASSY	ASSY. (418 aa)
	THAPS_35561	Arginase; Belongs to the arginase family. (299 aa)
	B8BRT0_THAPS	Adenosylmethionine--8-amino-7-oxononanoate aminotransferase. (170 aa)
	B8BSU7_THAPS	Uncharacterized protein. (121 aa)
	THAPSDRAFT_997	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (352 aa)
	AGPR	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle. (357 aa)
	ARGJ_THAPS	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate. (488 aa)
	ODC1	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (386 aa)
	B8BW88_THAPS	AA_kinase domain-containing protein. (339 aa)
	B8BZE7_THAPS	Ornithine aminotransferase. (455 aa)
	B8C183_THAPS	Aminoacylase 1. (382 aa)
	ASL	Argininosuccinate lyase. (469 aa)
	B8C9Z9_THAPS	AA_kinase domain-containing protein. (297 aa)
	B8CFS4_THAPS	N-acetyltransferase domain-containing protein. (422 aa)
	B8CGH5_THAPS	N-acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (479 aa)

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGPR	ARGJ_THAPS	B8BUF7	B8BVB6	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	0.989
AGPR	ASL	B8BUF7	B8C6D4	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	Argininosuccinate lyase.	0.974
AGPR	ASSY	B8BUF7	B5YLI4	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	ASSY.	0.966
AGPR	B8BRT0_THAPS	B8BUF7	B8BRT0	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	Adenosylmethionine--8-amino-7-oxononanoate aminotransferase.	0.739
AGPR	B8BSU7_THAPS	B8BUF7	B8BSU7	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	Uncharacterized protein.	0.696
AGPR	B8BW88_THAPS	B8BUF7	B8BW88	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	AA_kinase domain-containing protein.	0.827
AGPR	B8BZE7_THAPS	B8BUF7	B8BZE7	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	Ornithine aminotransferase.	0.739
AGPR	B8C183_THAPS	B8BUF7	B8C183	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	Aminoacylase 1.	0.868
AGPR	B8C9Z9_THAPS	B8BUF7	B8C9Z9	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	AA_kinase domain-containing protein.	0.735
AGPR	B8CFS4_THAPS	B8BUF7	B8CFS4	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	N-acetyltransferase domain-containing protein.	0.734
AGPR	B8CGH5_THAPS	B8BUF7	B8CGH5	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	N-acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.870
AGPR	ODC1	B8BUF7	B8BW07	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.516
AGPR	THAPSDRAFT_997	B8BUF7	B8BT16	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.952
AGPR	THAPS_35561	B8BUF7	B5YMM5	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	Arginase; Belongs to the arginase family.	0.590
ARGJ_THAPS	AGPR	B8BVB6	B8BUF7	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	0.989
ARGJ_THAPS	ASL	B8BVB6	B8C6D4	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	Argininosuccinate lyase.	0.962
ARGJ_THAPS	ASSY	B8BVB6	B5YLI4	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	ASSY.	0.963
ARGJ_THAPS	B8BRT0_THAPS	B8BVB6	B8BRT0	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	Adenosylmethionine--8-amino-7-oxononanoate aminotransferase.	0.677
ARGJ_THAPS	B8BSU7_THAPS	B8BVB6	B8BSU7	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	Uncharacterized protein.	0.661
ARGJ_THAPS	B8BW88_THAPS	B8BVB6	B8BW88	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	AA_kinase domain-containing protein.	0.977