(5 nodes) Tyrosine catabolic process network (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HDP1	4-hydroxyphenylpyruvate dioxygenase. (418 aa)
	B8BZV7_THAPS	Fumarylacetoacetase. (488 aa)
	B8BZV8_THAPS	Uncharacterized protein. (220 aa)
	B8C2R0_THAPS	Uncharacterized protein. (699 aa)
	B8C4S8_THAPS	Probable homogentisate 1,2-dioxygenase. (477 aa)

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B8BZV7_THAPS	B8BZV8_THAPS	B8BZV7	B8BZV8	Fumarylacetoacetase.	Uncharacterized protein.	0.770
B8BZV7_THAPS	B8C2R0_THAPS	B8BZV7	B8C2R0	Fumarylacetoacetase.	Uncharacterized protein.	0.614
B8BZV7_THAPS	B8C4S8_THAPS	B8BZV7	B8C4S8	Fumarylacetoacetase.	Probable homogentisate 1,2-dioxygenase.	0.887
B8BZV7_THAPS	HDP1	B8BZV7	B8BU80	Fumarylacetoacetase.	4-hydroxyphenylpyruvate dioxygenase.	0.753
B8BZV8_THAPS	B8BZV7_THAPS	B8BZV8	B8BZV7	Uncharacterized protein.	Fumarylacetoacetase.	0.770
B8BZV8_THAPS	B8C4S8_THAPS	B8BZV8	B8C4S8	Uncharacterized protein.	Probable homogentisate 1,2-dioxygenase.	0.852
B8C2R0_THAPS	B8BZV7_THAPS	B8C2R0	B8BZV7	Uncharacterized protein.	Fumarylacetoacetase.	0.614
B8C2R0_THAPS	B8C4S8_THAPS	B8C2R0	B8C4S8	Uncharacterized protein.	Probable homogentisate 1,2-dioxygenase.	0.871
B8C4S8_THAPS	B8BZV7_THAPS	B8C4S8	B8BZV7	Probable homogentisate 1,2-dioxygenase.	Fumarylacetoacetase.	0.887
B8C4S8_THAPS	B8BZV8_THAPS	B8C4S8	B8BZV8	Probable homogentisate 1,2-dioxygenase.	Uncharacterized protein.	0.852
B8C4S8_THAPS	B8C2R0_THAPS	B8C4S8	B8C2R0	Probable homogentisate 1,2-dioxygenase.	Uncharacterized protein.	0.871
B8C4S8_THAPS	HDP1	B8C4S8	B8BU80	Probable homogentisate 1,2-dioxygenase.	4-hydroxyphenylpyruvate dioxygenase.	0.991
HDP1	B8BZV7_THAPS	B8BU80	B8BZV7	4-hydroxyphenylpyruvate dioxygenase.	Fumarylacetoacetase.	0.753
HDP1	B8C4S8_THAPS	B8BU80	B8C4S8	4-hydroxyphenylpyruvate dioxygenase.	Probable homogentisate 1,2-dioxygenase.	0.991