(17 nodes) Fatty acid biosynthesis, and malonyl-CoA metabolic process network (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACC	Acetyl-coa carboxylase. (2088 aa)
	THAPS_23407	Predicted protein. (563 aa)
	THAPSDRAFT_961	Ketoacyl_synth_N domain-containing protein. (565 aa)
	B8BTK3_THAPS	Uncharacterized protein. (317 aa)
	B8BUL7_THAPS	Uncharacterized protein. (563 aa)
	B8BVD1_THAPS	Uncharacterized protein. (2251 aa)
	EAR1	Enoyl-reductase [NADH]. (312 aa)
	B8BYX2_THAPS	ATP-grasp domain-containing protein. (567 aa)
	B8BZX8_THAPS	Cytosolic Fe-S cluster assembly factor NUBP1 homolog; Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins; Belongs to the Mrp/NBP35 ATP-binding proteins family. NUBP1/NBP35 subfamily. (382 aa)
	B8C1R1_THAPS	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (465 aa)
	MCT1	Malonyl coa-acyl carrier protein transacylase. (356 aa)
	B8C490_THAPS	FabA domain-containing protein. (142 aa)
	KAS2	Probable beta-ketoacyl-acyl carrier protein synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (470 aa)
	B8CGH7_THAPS	Uncharacterized protein. (994 aa)
	KAS3	3-oxoacyl-synthase. (380 aa)
	B8CGL7_THAPS	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (419 aa)
	B8LDX1_THAPS	Predicted protein. (587 aa)

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACC	B8BUL7_THAPS	B5YMF5	B8BUL7	Acetyl-coa carboxylase.	Uncharacterized protein.	0.923
ACC	B8BVD1_THAPS	B5YMF5	B8BVD1	Acetyl-coa carboxylase.	Uncharacterized protein.	0.909
ACC	B8C1R1_THAPS	B5YMF5	B8C1R1	Acetyl-coa carboxylase.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.450
ACC	B8CGL7_THAPS	B5YMF5	B8CGL7	Acetyl-coa carboxylase.	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.441
ACC	KAS2	B5YMF5	B8C5X7	Acetyl-coa carboxylase.	Probable beta-ketoacyl-acyl carrier protein synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.436
ACC	KAS3	B5YMF5	B8CGL6	Acetyl-coa carboxylase.	3-oxoacyl-synthase.	0.936
ACC	MCT1	B5YMF5	B8C2A9	Acetyl-coa carboxylase.	Malonyl coa-acyl carrier protein transacylase.	0.952
ACC	THAPSDRAFT_961	B5YMF5	B8BSY1	Acetyl-coa carboxylase.	Ketoacyl_synth_N domain-containing protein.	0.436
B8BTK3_THAPS	B8C1R1_THAPS	B8BTK3	B8C1R1	Uncharacterized protein.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.952
B8BTK3_THAPS	B8C490_THAPS	B8BTK3	B8C490	Uncharacterized protein.	FabA domain-containing protein.	0.932
B8BTK3_THAPS	EAR1	B8BTK3	B8BXA1	Uncharacterized protein.	Enoyl-reductase [NADH].	0.923
B8BTK3_THAPS	KAS2	B8BTK3	B8C5X7	Uncharacterized protein.	Probable beta-ketoacyl-acyl carrier protein synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.945
B8BTK3_THAPS	KAS3	B8BTK3	B8CGL6	Uncharacterized protein.	3-oxoacyl-synthase.	0.920
B8BTK3_THAPS	MCT1	B8BTK3	B8C2A9	Uncharacterized protein.	Malonyl coa-acyl carrier protein transacylase.	0.967
B8BUL7_THAPS	ACC	B8BUL7	B5YMF5	Uncharacterized protein.	Acetyl-coa carboxylase.	0.923
B8BUL7_THAPS	B8BVD1_THAPS	B8BUL7	B8BVD1	Uncharacterized protein.	Uncharacterized protein.	0.922
B8BUL7_THAPS	MCT1	B8BUL7	B8C2A9	Uncharacterized protein.	Malonyl coa-acyl carrier protein transacylase.	0.837
B8BVD1_THAPS	ACC	B8BVD1	B5YMF5	Uncharacterized protein.	Acetyl-coa carboxylase.	0.909
B8BVD1_THAPS	B8BUL7_THAPS	B8BVD1	B8BUL7	Uncharacterized protein.	Uncharacterized protein.	0.922
B8BVD1_THAPS	B8C1R1_THAPS	B8BVD1	B8C1R1	Uncharacterized protein.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.472