(43 nodes) Energy derivation by oxidation of organic compounds network (Thalassiosira pseudonana)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	PsbV	Cytochrome c550, PsbV. (163 aa)
	psbV	Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II. (163 aa)
	atpB	ATP synthase subunit beta, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (474 aa)
	petB	Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (215 aa)
	THAPS_35642	Predicted protein. (61 aa)
	THAPS_41425	Cytosolic malate dehydrogenase; Belongs to the LDH/MDH superfamily. (374 aa)
	MDH1	Malate dehydrogenase. (352 aa)
	IDH1	Uncharacterized protein. (662 aa)
	SCS1	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (419 aa)
	B8BS58_THAPS	Lipoyl-binding domain-containing protein. (307 aa)
	B8BVG6_THAPS	Cytochrome b6-f complex iron-sulfur subunit; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (212 aa)
	B8BW71_THAPS	CIA30 domain-containing protein. (371 aa)
	risp1	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (168 aa)
	B8BX37_THAPS	EF-hand domain-containing protein. (560 aa)
	B8BXD4_THAPS	Uncharacterized protein. (90 aa)
	B8BXN8_THAPS	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. (672 aa)
	SDH1	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (240 aa)
	PPC1	Phosphoenolpyruvate carboxylase. (883 aa)
	SCS2	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (299 aa)
	B8C141_THAPS	Uncharacterized protein. (431 aa)
	PPC2	Phospoenolpyruvate carboxylase. (843 aa)
	B8C648_THAPS	Malate synthase; Belongs to the malate synthase family. (555 aa)
	B8C704_THAPS	NADH dehydrogenase. (261 aa)
	B8C935_THAPS	Uncharacterized protein. (512 aa)
	B8C948_THAPS	Uncharacterized protein. (533 aa)
	B8C955_THAPS	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family. (216 aa)
	B8CAK5_THAPS	Lipoyl-binding domain-containing protein. (378 aa)
	B8CB86_THAPS	Ni_hydr_CYTB domain-containing protein. (188 aa)
	B8CBG7_THAPS	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. (499 aa)
	B8CBP1_THAPS	Ubiquinol cytochrome c reductase. (78 aa)
	B8CBX3_THAPS	2-oxoglutarate dehydrogenase E1 component. (1015 aa)
	B8CC74_THAPS	Uncharacterized protein. (292 aa)
	B8CCG5_THAPS	Uncharacterized protein. (191 aa)
	B8CCT7_THAPS	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (637 aa)
	CSN1	Citrate synthase; Belongs to the citrate synthase family. (473 aa)
	B8CEH1_THAPS	Acetyl-coa synthetase. (973 aa)
	B8CG06_THAPS	Uncharacterized protein. (373 aa)
	B8CGD2_THAPS	Uncharacterized protein. (356 aa)
	LASPO	L-aspartate oxidase. (570 aa)
	PETC2	Cytochrome b6-f complex iron-sulfur subunit; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (181 aa)
	B8LD44_THAPS	Predicted protein. (636 aa)
	B8LD45_THAPS	Polyketide_cyc domain-containing protein. (205 aa)
	B8LDW8_THAPS	Cytochrome c1. (277 aa)

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B8BS58_THAPS	B8BVG6_THAPS	B8BS58	B8BVG6	Lipoyl-binding domain-containing protein.	Cytochrome b6-f complex iron-sulfur subunit; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	0.464
B8BS58_THAPS	B8BX37_THAPS	B8BS58	B8BX37	Lipoyl-binding domain-containing protein.	EF-hand domain-containing protein.	0.552
B8BS58_THAPS	B8C704_THAPS	B8BS58	B8C704	Lipoyl-binding domain-containing protein.	NADH dehydrogenase.	0.498
B8BS58_THAPS	B8C935_THAPS	B8BS58	B8C935	Lipoyl-binding domain-containing protein.	Uncharacterized protein.	0.533
B8BS58_THAPS	B8CBG7_THAPS	B8BS58	B8CBG7	Lipoyl-binding domain-containing protein.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.610
B8BS58_THAPS	B8CBX3_THAPS	B8BS58	B8CBX3	Lipoyl-binding domain-containing protein.	2-oxoglutarate dehydrogenase E1 component.	0.987
B8BS58_THAPS	B8CCG5_THAPS	B8BS58	B8CCG5	Lipoyl-binding domain-containing protein.	Uncharacterized protein.	0.538
B8BS58_THAPS	B8CCT7_THAPS	B8BS58	B8CCT7	Lipoyl-binding domain-containing protein.	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.641
B8BS58_THAPS	B8CEH1_THAPS	B8BS58	B8CEH1	Lipoyl-binding domain-containing protein.	Acetyl-coa synthetase.	0.680
B8BS58_THAPS	B8CG06_THAPS	B8BS58	B8CG06	Lipoyl-binding domain-containing protein.	Uncharacterized protein.	0.533
B8BS58_THAPS	B8LDW8_THAPS	B8BS58	B8LDW8	Lipoyl-binding domain-containing protein.	Cytochrome c1.	0.619
B8BS58_THAPS	CSN1	B8BS58	B8CEG2	Lipoyl-binding domain-containing protein.	Citrate synthase; Belongs to the citrate synthase family.	0.777
B8BS58_THAPS	LASPO	B8BS58	B8CGN4	Lipoyl-binding domain-containing protein.	L-aspartate oxidase.	0.641
B8BS58_THAPS	MDH1	B8BS58	B8BQC2	Lipoyl-binding domain-containing protein.	Malate dehydrogenase.	0.705
B8BS58_THAPS	PETC2	B8BS58	B8LD41	Lipoyl-binding domain-containing protein.	Cytochrome b6-f complex iron-sulfur subunit; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	0.464
B8BS58_THAPS	SCS1	B8BS58	B8BS06	Lipoyl-binding domain-containing protein.	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.752
B8BS58_THAPS	SCS2	B8BS58	B8C013	Lipoyl-binding domain-containing protein.	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	0.680
B8BS58_THAPS	SDH1	B8BS58	B8BYI4	Lipoyl-binding domain-containing protein.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.726
B8BS58_THAPS	THAPS_41425	B8BS58	B5YNR1	Lipoyl-binding domain-containing protein.	Cytosolic malate dehydrogenase; Belongs to the LDH/MDH superfamily.	0.535
B8BS58_THAPS	risp1	B8BS58	B8BX01	Lipoyl-binding domain-containing protein.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.465