STRINGSTRING
B8C1A2_THAPS B8C1A2_THAPS THAPS_269942 THAPS_269942 THAPSDRAFT_997 THAPSDRAFT_997 GDCP GDCP ALATS2 ALATS2 B8CCS6_THAPS B8CCS6_THAPS B8CFA3_THAPS B8CFA3_THAPS ALATS1 ALATS1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
B8C1A2_THAPSSerine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (468 aa)
THAPS_269942Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (531 aa)
THAPSDRAFT_997Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (352 aa)
GDCPGlycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine. (973 aa)
ALATS2Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (966 aa)
B8CCS6_THAPSSerine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (476 aa)
B8CFA3_THAPSUncharacterized protein. (253 aa)
ALATS1Alanine-trna ligase. (933 aa)
Your Current Organism:
Thalassiosira pseudonana
NCBI taxonomy Id: 35128
Other names: T. pseudonana
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