(14 nodes) Cytosolic small ribosomal subunit network (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RS15B	RS15B, ribosomal protein 15B 40S small ribosomal subunit; Belongs to the universal ribosomal protein uS19 family. (147 aa)
	RSP1	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (243 aa)
	RS20	RS20, ribosomal protein 20 40S small ribosomal subunit. (124 aa)
	RS10	RS10, ribosomal protein 10 40S small ribosomal subunit. (104 aa)
	RS23	RS23, ribosomal protein 23 40S small ribosomal subunit; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	RS19	RS19, ribosomal protein 19 40S small ribosomal subunit. (148 aa)
	RS24	RS24, ribosomal protein 24 40S small ribosomal subunit. (137 aa)
	RS26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (94 aa)
	RS25	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (112 aa)
	RS3A	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (259 aa)
	B8LCF3_THAPS	Predicted protein. (123 aa)
	rps10	30S ribosomal protein S10, chloroplastic; Involved in the binding of tRNA to the ribosomes. (107 aa)
	RS30	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (66 aa)
	RS7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (188 aa)

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B8LCF3_THAPS	RS10	B8LCF3	B8C179	Predicted protein.	RS10, ribosomal protein 10 40S small ribosomal subunit.	0.999
B8LCF3_THAPS	RS15B	B8LCF3	B8BXM5	Predicted protein.	RS15B, ribosomal protein 15B 40S small ribosomal subunit; Belongs to the universal ribosomal protein uS19 family.	0.999
B8LCF3_THAPS	RS19	B8LCF3	B8C3T8	Predicted protein.	RS19, ribosomal protein 19 40S small ribosomal subunit.	0.999
B8LCF3_THAPS	RS20	B8LCF3	B8C138	Predicted protein.	RS20, ribosomal protein 20 40S small ribosomal subunit.	0.991
B8LCF3_THAPS	RS23	B8LCF3	B8C1Z7	Predicted protein.	RS23, ribosomal protein 23 40S small ribosomal subunit; Belongs to the universal ribosomal protein uS12 family.	0.999
B8LCF3_THAPS	RS24	B8LCF3	B8C5V1	Predicted protein.	RS24, ribosomal protein 24 40S small ribosomal subunit.	0.999
B8LCF3_THAPS	RS25	B8LCF3	B8CCQ5	Predicted protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
B8LCF3_THAPS	RS26	B8LCF3	B8C5Y3	Predicted protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
B8LCF3_THAPS	RS30	B8LCF3	B8BQX6	Predicted protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
B8LCF3_THAPS	RS3A	B8LCF3	B8CET5	Predicted protein.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
B8LCF3_THAPS	RS7	B8LCF3	B8BUN1	Predicted protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
B8LCF3_THAPS	RSP1	B8LCF3	B8BYG9	Predicted protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
B8LCF3_THAPS	rps10	B8LCF3	A0T101	Predicted protein.	30S ribosomal protein S10, chloroplastic; Involved in the binding of tRNA to the ribosomes.	0.990
RS10	B8LCF3_THAPS	B8C179	B8LCF3	RS10, ribosomal protein 10 40S small ribosomal subunit.	Predicted protein.	0.999
RS10	RS15B	B8C179	B8BXM5	RS10, ribosomal protein 10 40S small ribosomal subunit.	RS15B, ribosomal protein 15B 40S small ribosomal subunit; Belongs to the universal ribosomal protein uS19 family.	0.999
RS10	RS19	B8C179	B8C3T8	RS10, ribosomal protein 10 40S small ribosomal subunit.	RS19, ribosomal protein 19 40S small ribosomal subunit.	0.999
RS10	RS20	B8C179	B8C138	RS10, ribosomal protein 10 40S small ribosomal subunit.	RS20, ribosomal protein 20 40S small ribosomal subunit.	0.996
RS10	RS23	B8C179	B8C1Z7	RS10, ribosomal protein 10 40S small ribosomal subunit.	RS23, ribosomal protein 23 40S small ribosomal subunit; Belongs to the universal ribosomal protein uS12 family.	0.999
RS10	RS24	B8C179	B8C5V1	RS10, ribosomal protein 10 40S small ribosomal subunit.	RS24, ribosomal protein 24 40S small ribosomal subunit.	0.999
RS10	RS25	B8C179	B8CCQ5	RS10, ribosomal protein 10 40S small ribosomal subunit.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999