(6 nodes) Aminotransferase class IV network (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BAT1	Branched-chain amino acid aminotransferase. (590 aa)
	B8C4P5_THAPS	Uncharacterized protein. (460 aa)
	B8C515_THAPS	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (351 aa)
	B8BQU4_THAPS	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (386 aa)
	B8BQU5_THAPS	Uncharacterized protein. (470 aa)
	B8BY53_THAPS	Uncharacterized protein. (407 aa)

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B8BQU5_THAPS	B8BY53_THAPS	B8BQU5	B8BY53	Uncharacterized protein.	Uncharacterized protein.	0.918
B8BQU5_THAPS	B8C515_THAPS	B8BQU5	B8C515	Uncharacterized protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.916
B8BY53_THAPS	B8BQU5_THAPS	B8BY53	B8BQU5	Uncharacterized protein.	Uncharacterized protein.	0.918
B8BY53_THAPS	B8C515_THAPS	B8BY53	B8C515	Uncharacterized protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.913
B8C515_THAPS	B8BQU5_THAPS	B8C515	B8BQU5	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.916
B8C515_THAPS	B8BY53_THAPS	B8C515	B8BY53	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.913