(23 nodes) ABC transporter type 1, transmembrane domain network (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B8BTP7_THAPS	Uncharacterized protein. (499 aa)
	B8LEB1_THAPS	Predicted protein. (372 aa)
	THAPS_799	ABC transporter. (502 aa)
	THAPS_38046	Predicted protein. (597 aa)
	THAPS_41403	ABC transporter. (1104 aa)
	THAPS_13175	ABC transporter, ATP binding protein. (542 aa)
	B8BPW6_THAPS	ABC transporter. (534 aa)
	B8BT47_THAPS	Uncharacterized protein. (615 aa)
	B8LEB2_THAPS	ABC transporter. (441 aa)
	B8LCY1_THAPS	ABC transporter. (618 aa)
	B8CG90_THAPS	ABC transporter. (1115 aa)
	B8CG83_THAPS	ABC transporter. (1239 aa)
	B8CBU2_THAPS	ABC transporter, MRP family. (1154 aa)
	B8CA11_THAPS	ABC transporter multi-drug efflux transporter-like protein. (1292 aa)
	B8C8K6_THAPS	ABC transporter. (584 aa)
	B8C6H8_THAPS	ABC transporter. (539 aa)
	B8C2B9_THAPS	ABC transporter. (709 aa)
	B8C1N1_THAPS	ABC transporter. (1409 aa)
	B8C0F8_THAPS	ABC transporter. (1151 aa)
	B8C0B8_THAPS	ABC transporter. (620 aa)
	B8BZT1_THAPS	ABC transporter. (1143 aa)
	B8BWG8_THAPS	ABC transporter. (1460 aa)
	B8BU07_THAPS	ABC transporter. (527 aa)

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B8BPW6_THAPS	B8C8K6_THAPS	B8BPW6	B8C8K6	ABC transporter.	ABC transporter.	0.465
B8BPW6_THAPS	B8LCY1_THAPS	B8BPW6	B8LCY1	ABC transporter.	ABC transporter.	0.463
B8BPW6_THAPS	B8LEB1_THAPS	B8BPW6	B8LEB1	ABC transporter.	Predicted protein.	0.719
B8BT47_THAPS	B8LEB1_THAPS	B8BT47	B8LEB1	Uncharacterized protein.	Predicted protein.	0.708
B8BTP7_THAPS	B8C8K6_THAPS	B8BTP7	B8C8K6	Uncharacterized protein.	ABC transporter.	0.429
B8BTP7_THAPS	B8LCY1_THAPS	B8BTP7	B8LCY1	Uncharacterized protein.	ABC transporter.	0.429
B8BTP7_THAPS	B8LEB1_THAPS	B8BTP7	B8LEB1	Uncharacterized protein.	Predicted protein.	0.850
B8BU07_THAPS	B8LEB1_THAPS	B8BU07	B8LEB1	ABC transporter.	Predicted protein.	0.891
B8BWG8_THAPS	B8C1N1_THAPS	B8BWG8	B8C1N1	ABC transporter.	ABC transporter.	0.905
B8BWG8_THAPS	B8CA11_THAPS	B8BWG8	B8CA11	ABC transporter.	ABC transporter multi-drug efflux transporter-like protein.	0.916
B8BWG8_THAPS	B8CBU2_THAPS	B8BWG8	B8CBU2	ABC transporter.	ABC transporter, MRP family.	0.425
B8BWG8_THAPS	B8LEB1_THAPS	B8BWG8	B8LEB1	ABC transporter.	Predicted protein.	0.442
B8BWG8_THAPS	B8LEB2_THAPS	B8BWG8	B8LEB2	ABC transporter.	ABC transporter.	0.440
B8C0B8_THAPS	B8C8K6_THAPS	B8C0B8	B8C8K6	ABC transporter.	ABC transporter.	0.429
B8C0B8_THAPS	B8LCY1_THAPS	B8C0B8	B8LCY1	ABC transporter.	ABC transporter.	0.429
B8C0B8_THAPS	B8LEB2_THAPS	B8C0B8	B8LEB2	ABC transporter.	ABC transporter.	0.772
B8C1N1_THAPS	B8BWG8_THAPS	B8C1N1	B8BWG8	ABC transporter.	ABC transporter.	0.905
B8C1N1_THAPS	B8CA11_THAPS	B8C1N1	B8CA11	ABC transporter.	ABC transporter multi-drug efflux transporter-like protein.	0.919
B8C1N1_THAPS	B8LEB1_THAPS	B8C1N1	B8LEB1	ABC transporter.	Predicted protein.	0.456
B8C1N1_THAPS	B8LEB2_THAPS	B8C1N1	B8LEB2	ABC transporter.	ABC transporter.	0.445