(47 nodes) ABC transporter-like, conserved site network (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B8C0F8_THAPS	ABC transporter. (1151 aa)
	B8C0S4_THAPS	Uncharacterized protein. (614 aa)
	B8C2B9_THAPS	ABC transporter. (709 aa)
	B8C1N1_THAPS	ABC transporter. (1409 aa)
	THAPS_38046	Predicted protein. (597 aa)
	THAPS_799	ABC transporter. (502 aa)
	THAPS_38095	Predicted protein. (177 aa)
	THAPS_263118	ABC transporter family protein. (190 aa)
	B8C1A4_THAPS	ABC cassette-containing protein. (935 aa)
	sufC	Iron-sulfur cluster formation ABC transporter ATP-binding subunit. (251 aa)
	THAPS_41403	ABC transporter. (1104 aa)
	THAPS_13175	ABC transporter, ATP binding protein. (542 aa)
	B8BPW6_THAPS	ABC transporter. (534 aa)
	B8BQ64_THAPS	ABC transporter. (627 aa)
	B8BS66_THAPS	ABC transporter. (695 aa)
	B8BTP7_THAPS	Uncharacterized protein. (499 aa)
	B8BTZ0_THAPS	ABC transporter family. (537 aa)
	B8BU07_THAPS	ABC transporter. (527 aa)
	B8BWG8_THAPS	ABC transporter. (1460 aa)
	B8BX45_THAPS	ABC transporter. (598 aa)
	B8BXL3_THAPS	Uncharacterized protein. (575 aa)
	B8BYF0_THAPS	ABC transporter. (668 aa)
	B8BZT1_THAPS	ABC transporter. (1143 aa)
	B8LEB2_THAPS	ABC transporter. (441 aa)
	B8LEB1_THAPS	Predicted protein. (372 aa)
	B8LE79_THAPS	ABC-transporter family protein. (547 aa)
	B8LDN2_THAPS	Predicted protein. (1003 aa)
	B8LCY1_THAPS	ABC transporter. (618 aa)
	B8CG83_THAPS	ABC transporter. (1239 aa)
	B8CG79_THAPS	ABC transporter. (616 aa)
	B8CFB5_THAPS	ABC transporter; Belongs to the ABC transporter superfamily. (1171 aa)
	B8CF32_THAPS	ABC transporter domain-containing protein. (197 aa)
	B8CF31_THAPS	ABC transporter. (389 aa)
	B8CEB9_THAPS	ABC-transporter like protein. (504 aa)
	B8CDY3_THAPS	ABC transporter protein. (1165 aa)
	B8CCS9_THAPS	ABC transporter domain-containing protein. (726 aa)
	B8CBU2_THAPS	ABC transporter, MRP family. (1154 aa)
	B8CB70_THAPS	Uncharacterized protein. (614 aa)
	B8CA11_THAPS	ABC transporter multi-drug efflux transporter-like protein. (1292 aa)
	B8C9F9_THAPS	ABC transporter domain-containing protein. (497 aa)
	B8C920_THAPS	Uncharacterized protein. (564 aa)
	B8C8K6_THAPS	ABC transporter. (584 aa)
	B8C6H8_THAPS	ABC transporter. (539 aa)
	B8C2J3_THAPS	ABC transporter domain-containing protein. (451 aa)
	B8CG90_THAPS	ABC transporter. (1115 aa)
	B8C008_THAPS	ABC transporter protein family. (533 aa)
	B8C0B8_THAPS	ABC transporter. (620 aa)

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B8BPW6_THAPS	B8C8K6_THAPS	B8BPW6	B8C8K6	ABC transporter.	ABC transporter.	0.465
B8BPW6_THAPS	B8LCY1_THAPS	B8BPW6	B8LCY1	ABC transporter.	ABC transporter.	0.463
B8BPW6_THAPS	B8LEB1_THAPS	B8BPW6	B8LEB1	ABC transporter.	Predicted protein.	0.719
B8BPW6_THAPS	THAPS_263118	B8BPW6	B5YMM3	ABC transporter.	ABC transporter family protein.	0.434
B8BQ64_THAPS	B8LE79_THAPS	B8BQ64	B8LE79	ABC transporter.	ABC-transporter family protein.	0.535
B8BS66_THAPS	B8C1A4_THAPS	B8BS66	B8C1A4	ABC transporter.	ABC cassette-containing protein.	0.413
B8BS66_THAPS	B8CEB9_THAPS	B8BS66	B8CEB9	ABC transporter.	ABC-transporter like protein.	0.471
B8BS66_THAPS	B8LE79_THAPS	B8BS66	B8LE79	ABC transporter.	ABC-transporter family protein.	0.535
B8BTP7_THAPS	B8C8K6_THAPS	B8BTP7	B8C8K6	Uncharacterized protein.	ABC transporter.	0.429
B8BTP7_THAPS	B8LCY1_THAPS	B8BTP7	B8LCY1	Uncharacterized protein.	ABC transporter.	0.429
B8BTP7_THAPS	B8LEB1_THAPS	B8BTP7	B8LEB1	Uncharacterized protein.	Predicted protein.	0.850
B8BTP7_THAPS	THAPS_263118	B8BTP7	B5YMM3	Uncharacterized protein.	ABC transporter family protein.	0.464
B8BTZ0_THAPS	B8LE79_THAPS	B8BTZ0	B8LE79	ABC transporter family.	ABC-transporter family protein.	0.478
B8BU07_THAPS	B8LEB1_THAPS	B8BU07	B8LEB1	ABC transporter.	Predicted protein.	0.891
B8BWG8_THAPS	B8C1N1_THAPS	B8BWG8	B8C1N1	ABC transporter.	ABC transporter.	0.905
B8BWG8_THAPS	B8CA11_THAPS	B8BWG8	B8CA11	ABC transporter.	ABC transporter multi-drug efflux transporter-like protein.	0.916
B8BWG8_THAPS	B8CBU2_THAPS	B8BWG8	B8CBU2	ABC transporter.	ABC transporter, MRP family.	0.425
B8BWG8_THAPS	B8LEB1_THAPS	B8BWG8	B8LEB1	ABC transporter.	Predicted protein.	0.442
B8BWG8_THAPS	B8LEB2_THAPS	B8BWG8	B8LEB2	ABC transporter.	ABC transporter.	0.440
B8BXL3_THAPS	B8LE79_THAPS	B8BXL3	B8LE79	Uncharacterized protein.	ABC-transporter family protein.	0.478