(11 nodes) (2016) Transgene Expression in Microalgae-From Tools to Applications. network (Thalassiosira pseudonana)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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protein homology

Your Input:
	GAPD4	Glyceraldehyde-3-phosphate dehydrogenase. (344 aa)
	atpA-2	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (542 aa)
	GAPD2	Glyceraldehyde-3-phosphate dehydrogenase. (353 aa)
	atpA-3	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (503 aa)
	gapC3	Glyceraldehyde-3-phosphate dehydrogenase. (336 aa)
	atpA	ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (503 aa)
	rbcS	Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit. (139 aa)
	GAPD1	Glyceraldehyde-3-phosphate dehydrogenase. (375 aa)
	petB	Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (215 aa)
	petB-2	Cytochrome B6. (215 aa)
	B8C246_THAPS	Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (615 aa)

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
atpA	atpA-2	A0T0P4	B8C6C6	ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.550
atpA	atpA-3	A0T0P4	B8LER1	ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.543
atpA	petB	A0T0P4	A0T0T6	ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.	Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	0.724
atpA	petB-2	A0T0P4	B8LES8	ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.	Cytochrome B6.	0.724
atpA	rbcS	A0T0P4	A0T0N5	ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.	Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit.	0.410
atpA-2	atpA	B8C6C6	A0T0P4	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.	0.550
atpA-2	atpA-3	B8C6C6	B8LER1	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.550
atpA-2	petB	B8C6C6	A0T0T6	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	0.720
atpA-2	petB-2	B8C6C6	B8LES8	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Cytochrome B6.	0.720
atpA-2	rbcS	B8C6C6	A0T0N5	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit.	0.410
atpA-3	atpA	B8LER1	A0T0P4	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.	0.543
atpA-3	atpA-2	B8LER1	B8C6C6	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.550
atpA-3	petB	B8LER1	A0T0T6	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	0.723
atpA-3	petB-2	B8LER1	B8LES8	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Cytochrome B6.	0.723
atpA-3	rbcS	B8LER1	A0T0N5	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit.	0.420
petB	atpA	A0T0T6	A0T0P4	Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.	0.724
petB	atpA-2	A0T0T6	B8C6C6	Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.720
petB	atpA-3	A0T0T6	B8LER1	Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.723
petB-2	atpA	B8LES8	A0T0P4	Cytochrome B6.	ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.	0.724
petB-2	atpA-2	B8LES8	B8C6C6	Cytochrome B6.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.720