(21 nodes) 2-Oxocarboxylic acid metabolism network (Thalassiosira pseudonana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALAT_2	Alanine aminotransferase, aminotransferase class I. (485 aa)
	AAT1_2	Aspartate aminotransferase. (416 aa)
	AAT2	Aspartate aminotransferase. (416 aa)
	B8BQU5_THAPS	Uncharacterized protein. (470 aa)
	B8BRI7_THAPS	Pyruvate carboxyltransferase domain-containing protein. (658 aa)
	AGPR	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle. (357 aa)
	ARGJ_THAPS	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate. (488 aa)
	B8BY53_THAPS	Uncharacterized protein. (407 aa)
	DAD1	Probable dihydroxyacid dehydratase. (640 aa)
	ALAT_1	Alanine aminotransferase. (444 aa)
	B8C183_THAPS	Aminoacylase 1. (382 aa)
	B8C486_THAPS	Uncharacterized protein; Belongs to the ketol-acid reductoisomerase family. (536 aa)
	B8C515_THAPS	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (351 aa)
	B8C653_THAPS	Uncharacterized protein. (299 aa)
	B8C663_THAPS	Uncharacterized protein; Belongs to the TPP enzyme family. (818 aa)
	B8C732_THAPS	2-isopropylmalate synthase. (570 aa)
	B8C772_THAPS	AA_kinase domain-containing protein. (619 aa)
	B8CAS2_THAPS	N-acetyltransferase domain-containing protein. (447 aa)
	LEU2	3-isopropylmalate dehydratase. (806 aa)
	CSN1	Citrate synthase; Belongs to the citrate synthase family. (473 aa)
	B8CFS8_THAPS	N-acetyltransferase domain-containing protein. (451 aa)

Your Current Organism:

Thalassiosira pseudonana

NCBI taxonomy Id: 35128
Other names: T. pseudonana

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAT1_2	AAT2	B5YN39	B8BQR8	Aspartate aminotransferase.	Aspartate aminotransferase.	0.904
AAT1_2	ALAT_1	B5YN39	B8C017	Aspartate aminotransferase.	Alanine aminotransferase.	0.943
AAT1_2	ALAT_2	B5YN39	B5YN17	Aspartate aminotransferase.	Alanine aminotransferase, aminotransferase class I.	0.943
AAT1_2	ARGJ_THAPS	B5YN39	B8BVB6	Aspartate aminotransferase.	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	0.906
AAT1_2	B8C772_THAPS	B5YN39	B8C772	Aspartate aminotransferase.	AA_kinase domain-containing protein.	0.886
AAT1_2	B8CAS2_THAPS	B5YN39	B8CAS2	Aspartate aminotransferase.	N-acetyltransferase domain-containing protein.	0.910
AAT1_2	B8CFS8_THAPS	B5YN39	B8CFS8	Aspartate aminotransferase.	N-acetyltransferase domain-containing protein.	0.910
AAT1_2	CSN1	B5YN39	B8CEG2	Aspartate aminotransferase.	Citrate synthase; Belongs to the citrate synthase family.	0.924
AAT2	AAT1_2	B8BQR8	B5YN39	Aspartate aminotransferase.	Aspartate aminotransferase.	0.904
AAT2	ALAT_1	B8BQR8	B8C017	Aspartate aminotransferase.	Alanine aminotransferase.	0.943
AAT2	ALAT_2	B8BQR8	B5YN17	Aspartate aminotransferase.	Alanine aminotransferase, aminotransferase class I.	0.943
AAT2	ARGJ_THAPS	B8BQR8	B8BVB6	Aspartate aminotransferase.	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	0.906
AAT2	B8C772_THAPS	B8BQR8	B8C772	Aspartate aminotransferase.	AA_kinase domain-containing protein.	0.884
AAT2	B8CAS2_THAPS	B8BQR8	B8CAS2	Aspartate aminotransferase.	N-acetyltransferase domain-containing protein.	0.910
AAT2	B8CFS8_THAPS	B8BQR8	B8CFS8	Aspartate aminotransferase.	N-acetyltransferase domain-containing protein.	0.910
AAT2	CSN1	B8BQR8	B8CEG2	Aspartate aminotransferase.	Citrate synthase; Belongs to the citrate synthase family.	0.924
AGPR	ARGJ_THAPS	B8BUF7	B8BVB6	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	0.989
AGPR	B8BRI7_THAPS	B8BUF7	B8BRI7	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	Pyruvate carboxyltransferase domain-containing protein.	0.519
AGPR	B8C183_THAPS	B8BUF7	B8C183	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	Aminoacylase 1.	0.868
AGPR	B8C732_THAPS	B8BUF7	B8C732	N-acetyl-gamma-glutamyl-phosphate reductase, urea cycle.	2-isopropylmalate synthase.	0.520