STRINGSTRING
Acel_0196 Acel_0196 Acel_0197 Acel_0197 Acel_0198 Acel_0198 Acel_0469 Acel_0469 Acel_0473 Acel_0473 Acel_0474 Acel_0474 Acel_0475 Acel_0475
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Acel_0196Hypothetical protein. (88 aa)
Acel_0197PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: gsu:GSU1866 PhoH family protein. (495 aa)
Acel_0198PFAM: NLP/P60 protein; KEGG: nfa:nfa34810 putative invasin. (458 aa)
Acel_0469tRNA/rRNA methyltransferase (SpoU); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (163 aa)
Acel_0473Hypothetical protein. (104 aa)
Acel_0474KEGG: rsp:RSP_1880 hypothetical protein. (147 aa)
Acel_0475PFAM: PDZ/DHR/GLGF domain protein; peptidase S16, lon domain protein; KEGG: mbo:Mb3216c PDZ domain-containing protein. (394 aa)
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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