STRINGSTRING
XDD1_0770 XDD1_0770 XDD1_1031 XDD1_1031 xcnL xcnL XDD1_1906 XDD1_1906 XDD1_1907 XDD1_1907 XDD1_1908 XDD1_1908 XDD1_2281 XDD1_2281 XDD1_2286 XDD1_2286 XDD1_2711 XDD1_2711 XDD1_2712 XDD1_2712 XDD1_2715 XDD1_2715
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XDD1_0770Homologs of previously reported genes of unknown function; Belongs to the ATP-dependent AMP-binding enzyme family. (1132 aa)
XDD1_1031Protein of unknown function; No homology to any previously reported sequences. (533 aa)
xcnLPolyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (1487 aa)
XDD1_1906Putative Phenylalanine racemase (ATP-hydrolyzing); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (3907 aa)
XDD1_1907Putative Non-ribosomal peptide synthase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (2006 aa)
XDD1_1908Putative Phenylalanine racemase (ATP-hydrolyzing) (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (2079 aa)
XDD1_2281Putative Ornithine racemase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (7632 aa)
XDD1_2286Putative Ornithine racemase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (7310 aa)
XDD1_2711Putative polyketide synthase type I; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (1670 aa)
XDD1_2712Non-ribosomal peptide synthetase modules and related protein; Function of strongly homologous gene; enzyme. (2180 aa)
XDD1_2715Polyketide synthase modules and related protein; Function of strongly homologous gene; enzyme. (2211 aa)
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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