STRINGSTRING
XDD1_0655 XDD1_0655 XDD1_1921 XDD1_1921 XDD1_1922 XDD1_1922 XDD1_1923 XDD1_1923 puuE puuE yhaH yhaH XDD1_1927 XDD1_1927 dgoK dgoK dgoA dgoA dgoD dgoD dgoT dgoT XDD1_1933 XDD1_1933 XDD1_2154 XDD1_2154
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XDD1_0655Putative oxidoreductase with FAD/NAD(P)-binding domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (439 aa)
XDD1_1921Homologs of previously reported genes of unknown function. (257 aa)
XDD1_1922Regulatory protein, gntr; Function of strongly homologous gene; regulator. (251 aa)
XDD1_1923Homologs of previously reported genes of unknown function. (250 aa)
puuE4-aminobutyrate aminotransferase; Function of strongly homologous gene; enzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (428 aa)
yhaHInner membrane protein yhaH. (132 aa)
XDD1_1927FAD dependent oxidoreductase; Function of strongly homologous gene; enzyme. (514 aa)
dgoK2-dehydro-3-deoxygalactonokinase. (297 aa)
dgoA2-dehydro-3-deoxy-6-phosphogalactonate aldolase. (205 aa)
dgoDD-galactonate dehydratase; Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy- D-galactonate. (382 aa)
dgoTD-galactonate transporter. (425 aa)
XDD1_1933Homologs of previously reported genes of unknown function. (279 aa)
XDD1_2154Omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (443 aa)
Your Current Organism:
Xenorhabdus doucetiae
NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16
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