(5 nodes) Polyketide synthase, C-terminal extension network (Xenorhabdus doucetiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	xcnF	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (3416 aa)
	xcnL	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (1487 aa)
	XDD1_2711	Putative polyketide synthase type I; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (1670 aa)
	xcnH	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (1926 aa)
	XDD1_2715	Polyketide synthase modules and related protein; Function of strongly homologous gene; enzyme. (2211 aa)

Your Current Organism:

Xenorhabdus doucetiae

NCBI taxonomy Id: 351671
Other names: CIP 109074, DSM 17909, X. doucetiae, Xenorhabdus doucetiae Tailliez et al. 2006, Xenorhabdus sp. FRG30, strain FRM16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
XDD1_2711	XDD1_2715	XDD1_2711	XDD1_2715	Putative polyketide synthase type I; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Polyketide synthase modules and related protein; Function of strongly homologous gene; enzyme.	0.998
XDD1_2711	xcnF	XDD1_2711	XDD1_1796	Putative polyketide synthase type I; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.962
XDD1_2711	xcnH	XDD1_2711	XDD1_1798	Putative polyketide synthase type I; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.954
XDD1_2711	xcnL	XDD1_2711	XDD1_1802	Putative polyketide synthase type I; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.950
XDD1_2715	XDD1_2711	XDD1_2715	XDD1_2711	Polyketide synthase modules and related protein; Function of strongly homologous gene; enzyme.	Putative polyketide synthase type I; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.998
XDD1_2715	xcnF	XDD1_2715	XDD1_1796	Polyketide synthase modules and related protein; Function of strongly homologous gene; enzyme.	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.741
XDD1_2715	xcnH	XDD1_2715	XDD1_1798	Polyketide synthase modules and related protein; Function of strongly homologous gene; enzyme.	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.978
XDD1_2715	xcnL	XDD1_2715	XDD1_1802	Polyketide synthase modules and related protein; Function of strongly homologous gene; enzyme.	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.720
xcnF	XDD1_2711	XDD1_1796	XDD1_2711	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	Putative polyketide synthase type I; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.962
xcnF	XDD1_2715	XDD1_1796	XDD1_2715	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	Polyketide synthase modules and related protein; Function of strongly homologous gene; enzyme.	0.741
xcnF	xcnH	XDD1_1796	XDD1_1798	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.895
xcnF	xcnL	XDD1_1796	XDD1_1802	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.670
xcnH	XDD1_2711	XDD1_1798	XDD1_2711	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	Putative polyketide synthase type I; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.954
xcnH	XDD1_2715	XDD1_1798	XDD1_2715	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	Polyketide synthase modules and related protein; Function of strongly homologous gene; enzyme.	0.978
xcnH	xcnF	XDD1_1798	XDD1_1796	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.895
xcnH	xcnL	XDD1_1798	XDD1_1802	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.801
xcnL	XDD1_2711	XDD1_1802	XDD1_2711	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	Putative polyketide synthase type I; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.950
xcnL	XDD1_2715	XDD1_1802	XDD1_2715	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	Polyketide synthase modules and related protein; Function of strongly homologous gene; enzyme.	0.720
xcnL	xcnF	XDD1_1802	XDD1_1796	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.670
xcnL	xcnH	XDD1_1802	XDD1_1798	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	Polyketide synthase involved in xenocoumacin synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme.	0.801