STRINGSTRING
KLU17330.1 KLU17330.1 pcnB pcnB KLU15299.1 KLU15299.1 KLU15147.1 KLU15147.1 KLU14660.1 KLU14660.1 KLU13982.1 KLU13982.1 KLU15710.1 KLU15710.1 KLU15868.1 KLU15868.1 KLU15979.1 KLU15979.1 hscA hscA KLU16107.1 KLU16107.1 KLU16171.1 KLU16171.1 KLU16260.1 KLU16260.1 eno eno KLU16576.1 KLU16576.1 rne rne KLU16700.1 KLU16700.1 dnaK dnaK groEL groEL KLU17061.1 KLU17061.1 KLU17028.1 KLU17028.1 KLU17275.1 KLU17275.1 KLU17425.1 KLU17425.1 rho rho KLU17394.1 KLU17394.1 hfq hfq KLU17372.1 KLU17372.1 KLU17332.1 KLU17332.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KLU17330.1DEAD/DEAH box helicase; Participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; Derived by automated computational analysis using gene prediction method: Protein Homology. (639 aa)
pcnBPolymerase that creates the 3' poly(A) tail found in some mRNA's; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
KLU15299.1Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
KLU15147.1ATP-dependent RNA helicase RhlE; This helicase is not essential cell growth; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
KLU14660.1DNA topoisomerase I; Catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; Derived by automated computational analysis using gene prediction method: Protein Homology. (865 aa)
KLU13982.1DNA topoisomerase III; Decatenates replicating daughter chromosomes; Derived by automated computational analysis using gene prediction method: Protein Homology. (648 aa)
KLU15710.1GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
KLU15868.1Involved in the processing of the 5'end of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)
KLU15979.16-phosphofructokinase; Catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
hscAChaperone protein HscA; Involved in the maturation of iron-sulfur cluster-containing proteins; Derived by automated computational analysis using gene prediction method: Protein Homology. (615 aa)
KLU16107.1DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)
KLU16171.1ATP-dependent RNA helicase SrmB; Facilitates an early step in the assembly of the 50S subunit of the ribosome; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
KLU16260.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
enoEnolase; Catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
KLU16576.1Polyphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
rneBifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1081 aa)
KLU16700.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
dnaKMolecular chaperone DnaK; Heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology. (636 aa)
groELMolecular chaperone GroEL; 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; Derived by autom [...] (548 aa)
KLU17061.1tRNA nucleotidyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
KLU17028.1RNA pyrophosphohydrolase; Hydrolyzes diadenosine polyphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
KLU17275.1Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
KLU17425.1Enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
rhoTranscription termination factor Rho; An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
KLU17394.1ATP-dependent DNA helicase RecQ; Functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. (608 aa)
hfqRNA-binding protein Hfq; HF-I, host factor for RNA phage Q beta replication; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)
KLU17372.13'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology. (815 aa)
KLU17332.1Polynucleotide phosphorylase/polyadenylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (712 aa)
Your Current Organism:
Xenorhabdus griffiniae
NCBI taxonomy Id: 351672
Other names: CIP 109073, DSM 17911, X. griffiniae, Xenorhabdus griffiniae Tailliez et al. 2006, Xenorhabdus sp. ID10, strain ID10
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