(34 nodes) Mixed, incl. Integrase, DNA-binding domain, and Archaeal primase DnaG/twinkle-like, TOPRIM domain network (Xenorhabdus mauleonii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFI40387.1	Putative DNA primase/helicase. (468 aa)
	SFI40415.1	Putative DNA primase/helicase. (283 aa)
	SFI40450.1	Hypothetical protein. (136 aa)
	SFI40483.1	Hypothetical protein. (60 aa)
	SFI40511.1	Phage integrase family protein. (182 aa)
	SFI40545.1	Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family. (172 aa)
	SFI42072.1	Major Facilitator Superfamily protein. (163 aa)
	SFI42136.1	Transcriptional regulator, TetR family. (187 aa)
	SFI40031.1	Protein of unknown function. (94 aa)
	SFI58069.1	Integrase; Belongs to the 'phage' integrase family. (270 aa)
	SFI68526.1	Hypothetical protein. (98 aa)
	SFI74150.1	Plasmid and phage DNA primase. (812 aa)
	SFI74184.1	Transcriptional regulator, AlpA family. (68 aa)
	SFI74222.1	Integrase; Belongs to the 'phage' integrase family. (418 aa)
	SFI68567.1	EamA-like transporter family protein. (183 aa)
	SFJ28009.1	Putative DNA primase/helicase. (812 aa)
	SFJ28046.1	Transcriptional regulator, AlpA family. (68 aa)
	SFJ28084.1	Integrase; Belongs to the 'phage' integrase family. (376 aa)
	SFJ79941.1	Protein of unknown function. (81 aa)
	SFJ93741.1	Integrase; Belongs to the 'phage' integrase family. (405 aa)
	SFJ97023.1	Plasmid and phage DNA primase. (652 aa)
	SFK13225.1	Transcriptional regulator, AlpA family. (69 aa)
	SFK13292.1	Phage integrase family protein. (247 aa)
	SFK13317.1	Protein of unknown function. (114 aa)
	SFK13174.1	Putative DNA primase/helicase. (924 aa)
	SFK19405.1	Integrase; Belongs to the 'phage' integrase family. (420 aa)
	SFK19425.1	Transcriptional regulator, AlpA family. (70 aa)
	SFK19443.1	Hypothetical protein. (240 aa)
	SFK19465.1	Hypothetical protein. (136 aa)
	SFK19484.1	Putative DNA primase/helicase. (87 aa)
	SFK20214.1	Protein of unknown function; Belongs to the 'phage' integrase family. (404 aa)
	SFK26125.1	Phage integrase family protein; Belongs to the 'phage' integrase family. (407 aa)
	SFK29566.1	Hypothetical protein. (109 aa)
	SFK39032.1	Putative DNA primase/helicase. (483 aa)

Your Current Organism:

Xenorhabdus mauleonii

NCBI taxonomy Id: 351675
Other names: CIP 109075, DSM 17908, X. mauleonii, Xenorhabdus mauleonii Tailliez et al. 2006, Xenorhabdus sp. VC01, strain VC01

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFI40031.1	SFI40415.1	SAMN05421680_10194	SAMN05421680_101108	Protein of unknown function.	Putative DNA primase/helicase.	0.400
SFI40031.1	SFI40511.1	SAMN05421680_10194	SAMN05421680_101111	Protein of unknown function.	Phage integrase family protein.	0.773
SFI40031.1	SFI58069.1	SAMN05421680_10194	SAMN05421680_102163	Protein of unknown function.	Integrase; Belongs to the 'phage' integrase family.	0.773
SFI40031.1	SFI74184.1	SAMN05421680_10194	SAMN05421680_103145	Protein of unknown function.	Transcriptional regulator, AlpA family.	0.465
SFI40031.1	SFJ28046.1	SAMN05421680_10194	SAMN05421680_10715	Protein of unknown function.	Transcriptional regulator, AlpA family.	0.496
SFI40031.1	SFJ79941.1	SAMN05421680_10194	SAMN05421680_11676	Protein of unknown function.	Protein of unknown function.	0.416
SFI40031.1	SFJ93741.1	SAMN05421680_10194	SAMN05421680_12059	Protein of unknown function.	Integrase; Belongs to the 'phage' integrase family.	0.756
SFI40031.1	SFK13174.1	SAMN05421680_10194	SAMN05421680_1319	Protein of unknown function.	Putative DNA primase/helicase.	0.465
SFI40031.1	SFK13225.1	SAMN05421680_10194	SAMN05421680_13111	Protein of unknown function.	Transcriptional regulator, AlpA family.	0.471
SFI40031.1	SFK13292.1	SAMN05421680_10194	SAMN05421680_13113	Protein of unknown function.	Phage integrase family protein.	0.772
SFI40031.1	SFK13317.1	SAMN05421680_10194	SAMN05421680_13114	Protein of unknown function.	Protein of unknown function.	0.774
SFI40031.1	SFK19405.1	SAMN05421680_10194	SAMN05421680_13535	Protein of unknown function.	Integrase; Belongs to the 'phage' integrase family.	0.773
SFI40031.1	SFK20214.1	SAMN05421680_10194	SAMN05421680_13620	Protein of unknown function.	Protein of unknown function; Belongs to the 'phage' integrase family.	0.764
SFI40031.1	SFK26125.1	SAMN05421680_10194	SAMN05421680_1436	Protein of unknown function.	Phage integrase family protein; Belongs to the 'phage' integrase family.	0.770
SFI40031.1	SFK29566.1	SAMN05421680_10194	SAMN05421680_1501	Protein of unknown function.	Hypothetical protein.	0.760
SFI40387.1	SFI40415.1	SAMN05421680_101107	SAMN05421680_101108	Putative DNA primase/helicase.	Putative DNA primase/helicase.	0.713
SFI40387.1	SFI40450.1	SAMN05421680_101107	SAMN05421680_101109	Putative DNA primase/helicase.	Hypothetical protein.	0.508
SFI40387.1	SFI42072.1	SAMN05421680_101107	SAMN05421680_101165	Putative DNA primase/helicase.	Major Facilitator Superfamily protein.	0.422
SFI40387.1	SFI68567.1	SAMN05421680_101107	SAMN05421680_1032	Putative DNA primase/helicase.	EamA-like transporter family protein.	0.566
SFI40387.1	SFK19484.1	SAMN05421680_101107	SAMN05421680_13539	Putative DNA primase/helicase.	Putative DNA primase/helicase.	0.654