(11 nodes) Arm DNA-binding domain, and Viral latency network (Xenorhabdus mauleonii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFI40511.1	Phage integrase family protein. (182 aa)
	SFI40545.1	Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family. (172 aa)
	SFI40031.1	Protein of unknown function. (94 aa)
	SFI58069.1	Integrase; Belongs to the 'phage' integrase family. (270 aa)
	SFJ79941.1	Protein of unknown function. (81 aa)
	SFJ93741.1	Integrase; Belongs to the 'phage' integrase family. (405 aa)
	SFK13292.1	Phage integrase family protein. (247 aa)
	SFK13317.1	Protein of unknown function. (114 aa)
	SFK19405.1	Integrase; Belongs to the 'phage' integrase family. (420 aa)
	SFK20214.1	Protein of unknown function; Belongs to the 'phage' integrase family. (404 aa)
	SFK26125.1	Phage integrase family protein; Belongs to the 'phage' integrase family. (407 aa)

Your Current Organism:

Xenorhabdus mauleonii

NCBI taxonomy Id: 351675
Other names: CIP 109075, DSM 17908, X. mauleonii, Xenorhabdus mauleonii Tailliez et al. 2006, Xenorhabdus sp. VC01, strain VC01

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFI40031.1	SFI40511.1	SAMN05421680_10194	SAMN05421680_101111	Protein of unknown function.	Phage integrase family protein.	0.773
SFI40031.1	SFI58069.1	SAMN05421680_10194	SAMN05421680_102163	Protein of unknown function.	Integrase; Belongs to the 'phage' integrase family.	0.773
SFI40031.1	SFJ79941.1	SAMN05421680_10194	SAMN05421680_11676	Protein of unknown function.	Protein of unknown function.	0.416
SFI40031.1	SFJ93741.1	SAMN05421680_10194	SAMN05421680_12059	Protein of unknown function.	Integrase; Belongs to the 'phage' integrase family.	0.756
SFI40031.1	SFK13292.1	SAMN05421680_10194	SAMN05421680_13113	Protein of unknown function.	Phage integrase family protein.	0.772
SFI40031.1	SFK13317.1	SAMN05421680_10194	SAMN05421680_13114	Protein of unknown function.	Protein of unknown function.	0.774
SFI40031.1	SFK19405.1	SAMN05421680_10194	SAMN05421680_13535	Protein of unknown function.	Integrase; Belongs to the 'phage' integrase family.	0.773
SFI40031.1	SFK20214.1	SAMN05421680_10194	SAMN05421680_13620	Protein of unknown function.	Protein of unknown function; Belongs to the 'phage' integrase family.	0.764
SFI40031.1	SFK26125.1	SAMN05421680_10194	SAMN05421680_1436	Protein of unknown function.	Phage integrase family protein; Belongs to the 'phage' integrase family.	0.770
SFI40511.1	SFI40031.1	SAMN05421680_101111	SAMN05421680_10194	Phage integrase family protein.	Protein of unknown function.	0.773
SFI40511.1	SFI40545.1	SAMN05421680_101111	SAMN05421680_101112	Phage integrase family protein.	Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.	0.987
SFI40511.1	SFJ93741.1	SAMN05421680_101111	SAMN05421680_12059	Phage integrase family protein.	Integrase; Belongs to the 'phage' integrase family.	0.769
SFI40511.1	SFK13317.1	SAMN05421680_101111	SAMN05421680_13114	Phage integrase family protein.	Protein of unknown function.	0.774
SFI40511.1	SFK20214.1	SAMN05421680_101111	SAMN05421680_13620	Phage integrase family protein.	Protein of unknown function; Belongs to the 'phage' integrase family.	0.771
SFI40511.1	SFK26125.1	SAMN05421680_101111	SAMN05421680_1436	Phage integrase family protein.	Phage integrase family protein; Belongs to the 'phage' integrase family.	0.774
SFI40545.1	SFI40511.1	SAMN05421680_101112	SAMN05421680_101111	Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.	Phage integrase family protein.	0.987
SFI40545.1	SFI58069.1	SAMN05421680_101112	SAMN05421680_102163	Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.	Integrase; Belongs to the 'phage' integrase family.	0.781
SFI40545.1	SFJ79941.1	SAMN05421680_101112	SAMN05421680_11676	Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.	Protein of unknown function.	0.446
SFI40545.1	SFJ93741.1	SAMN05421680_101112	SAMN05421680_12059	Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.	Integrase; Belongs to the 'phage' integrase family.	0.771
SFI40545.1	SFK13292.1	SAMN05421680_101112	SAMN05421680_13113	Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.	Phage integrase family protein.	0.976