STRINGSTRING
AOM40064.1 AOM40064.1 AOM40078.1 AOM40078.1 AOM40142.1 AOM40142.1 AOM40143.1 AOM40143.1 AOM40144.1 AOM40144.1 AOM40146.1 AOM40146.1 purU purU lplA lplA AOM40321.1 AOM40321.1 arnF arnF arnE arnE arnT arnT arnD arnD arnA arnA arnC arnC arnB arnB AOM40690.1 AOM40690.1 AOM40716.1 AOM40716.1 AOM42849.1 AOM42849.1 lipB lipB lipA lipA crcB crcB gmhA gmhA AOM41110.1 AOM41110.1 AOM41142.1 AOM41142.1 AOM41724.1 AOM41724.1 AOM41725.1 AOM41725.1 AOM41726.1 AOM41726.1 AOM41727.1 AOM41727.1 AOM41728.1 AOM41728.1 AOM41729.1 AOM41729.1 AOM41730.1 AOM41730.1 AOM41731.1 AOM41731.1 AOM41732.1 AOM41732.1 AOM41733.1 AOM41733.1 trmL trmL hldD hldD AOM41744.1 AOM41744.1 AOM41745.1 AOM41745.1 AOM41746.1 AOM41746.1 AOM42911.1 AOM42911.1 AOM41747.1 AOM41747.1 AOM41748.1 AOM41748.1 AOM41749.1 AOM41749.1 AOM41750.1 AOM41750.1 AOM41752.1 AOM41752.1 AOM41755.1 AOM41755.1 AOM41757.1 AOM41757.1 rsmJ rsmJ AOM41864.1 AOM41864.1 AOM42174.1 AOM42174.1 AOM42175.1 AOM42175.1 AOM42176.1 AOM42176.1 AOM42177.1 AOM42177.1 rsmI rsmI hldE hldE AOM42287.1 AOM42287.1 AOM42353.1 AOM42353.1 AOM42358.1 AOM42358.1 AOM42459.1 AOM42459.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AOM40064.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0178 family. (151 aa)
AOM40078.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
AOM40142.1Capsular biosynthesis protein CpsI; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
AOM40143.1UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
AOM40144.1UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
AOM40146.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
purUFormyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). (282 aa)
lplALipoate--protein ligase; Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl onto the lipoyl domains of lipoate-dependent enzymes. Belongs to the LplA family. (336 aa)
AOM40321.1Endopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)
arnF4-amino-4-deoxy-L-arabinose-phospho-UDP flippase; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane; Belongs to the ArnF family. (128 aa)
arnE4-amino-4-deoxy-L-arabinose-phospho-UDP flippase; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane; Belongs to the ArnE family. (115 aa)
arnT4-amino-4-deoxy-L-arabinose lipid A transferase; Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Belongs to the glycosyltransferase 83 family. (553 aa)
arnD4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase; Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily. (297 aa)
arnABifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily. (660 aa)
arnCUndecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase; Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. (325 aa)
arnBUDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily. (381 aa)
AOM40690.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
AOM40716.1Undecaprenyl-diphosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
AOM42849.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
lipBOctanoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. (211 aa)
lipALipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (321 aa)
crcBFluoride ion transporter CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. (124 aa)
gmhAPhosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate. (193 aa)
AOM41110.1UDP-glucose 4-epimerase GalE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (339 aa)
AOM41142.1Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
AOM41724.1Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
AOM41725.1Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
AOM41726.1Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
AOM41727.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (292 aa)
AOM41728.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (421 aa)
AOM41729.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (329 aa)
AOM41730.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (312 aa)
AOM41731.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (358 aa)
AOM41732.1Amylovoran biosynthesis protein AmsE; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
AOM41733.1UDP-N-acetylglucosamine 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
trmLtRNA (cytosine(34)-2'-O)-methyltransferase TrmL; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. (167 aa)
hldDADP-glyceromanno-heptose 6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily. (312 aa)
AOM41744.1ADP-heptose--LPS heptosyltransferase; Catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
AOM41745.1Lipopolysaccharide heptosyltransferase 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
AOM41746.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
AOM42911.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
AOM41747.1Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
AOM41748.1Putative lipopolysaccharide heptosyltransferase III; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
AOM41749.1Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
AOM41750.1Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
AOM41752.1Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
AOM41755.1Ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
AOM41757.1WalO protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
rsmJTranscriptional regulator; Specifically methylates the guanosine in position 1516 of 16S rRNA. (247 aa)
AOM41864.1Derived by automated computational analysis using gene prediction method: Protein Homology. (680 aa)
AOM42174.1Osmotically-inducible protein OsmY; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
AOM42175.1Phosphoheptose isomerase; Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
AOM42176.1YraN family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0102 family. (121 aa)
AOM42177.1Penicillin-binding protein activator LpoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (652 aa)
rsmI16S rRNA (cytidine(1402)-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (296 aa)
hldEBifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family. (474 aa)
AOM42287.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (567 aa)
AOM42353.1tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
AOM42358.1D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
AOM42459.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
Your Current Organism:
Xenorhabdus hominickii
NCBI taxonomy Id: 351679
Other names: CIP 109072, DSM 17903, X. hominickii, Xenorhabdus hominickii Taillez et al. 2006, Xenorhabdus sp. KE01, Xenorhabdus sp. KR01, Xenorhabdus sp. KR05, strain KE01
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