STRINGSTRING
AOM42924.1 AOM42924.1 cysA cysA AOM42766.1 AOM42766.1 AOM39413.1 AOM39413.1 nuoC nuoC AOM39439.1 AOM39439.1 AOM39440.1 AOM39440.1 AOM39885.1 AOM39885.1 AOM40136.1 AOM40136.1 AOM40137.1 AOM40137.1 AOM40256.1 AOM40256.1 AOM40282.1 AOM40282.1 AOM40343.1 AOM40343.1 AOM40344.1 AOM40344.1 AOM40345.1 AOM40345.1 AOM40457.1 AOM40457.1 AOM40647.1 AOM40647.1 AOM40661.1 AOM40661.1 AOM40710.1 AOM40710.1 artM artM AOM40770.1 AOM40770.1 AOM40771.1 AOM40771.1 AOM40772.1 AOM40772.1 AOM40800.1 AOM40800.1 AOM40825.1 AOM40825.1 AOM40873.1 AOM40873.1 AOM40874.1 AOM40874.1 A9255_11740 A9255_11740 AOM41193.1 AOM41193.1 AOM41194.1 AOM41194.1 AOM42875.1 AOM42875.1 AOM41197.1 AOM41197.1 AOM41200.1 AOM41200.1 AOM42884.1 AOM42884.1 potA potA AOM41470.1 AOM41470.1 AOM41471.1 AOM41471.1 AOM41480.1 AOM41480.1 AOM41509.1 AOM41509.1 btuB btuB atpC atpC atpD atpD atpG atpG atpA atpA atpH atpH atpF-2 atpF-2 atpE atpE atpB atpB AOM41913.1 AOM41913.1 AOM41918.1 AOM41918.1 AOM41919.1 AOM41919.1 AOM41956.1 AOM41956.1 AOM41969.1 AOM41969.1 AOM42008.1 AOM42008.1 lamB lamB malF malF frdD frdD frdC frdC AOM42149.1 AOM42149.1 AOM42941.1 AOM42941.1 tatA tatA tatB tatB tatC tatC fbpC fbpC AOM42535.1 AOM42535.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AOM42924.1Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (344 aa)
cysASulfate/thiosulfate transporter subunit; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (362 aa)
AOM42766.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
AOM39413.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
nuoCNADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. (598 aa)
AOM39439.1NADH-quinone oxidoreductase subunit E; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
AOM39440.1NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (454 aa)
AOM39885.1Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
AOM40136.1Oligopeptide ABC transporter substrate-binding protein OppA; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
AOM40137.1Oligopeptide ABC transporter substrate-binding protein OppA; Is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology. (546 aa)
AOM40256.1Oligopeptide ABC transporter substrate-binding protein OppA; Is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
AOM40282.1Peptide ABC transporter substrate-binding protein SapA; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)
AOM40343.1Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
AOM40344.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
AOM40345.1Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
AOM40457.1NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
AOM40647.1Porin OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (365 aa)
AOM40661.1Porin; Allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Gram-negative porin family. (366 aa)
AOM40710.1Arginine transporter permease subunit ArtQ; With ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
artMArginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
AOM40770.1Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (578 aa)
AOM40771.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
AOM40772.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
AOM40800.1Molybdate ABC transporter ATP-binding protein ModF; Derived by automated computational analysis using gene prediction method: Protein Homology. (497 aa)
AOM40825.1Succinate dehydrogenase, cytochrome b556 subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
AOM40873.1Amino acid ABC transporter permease; With GltIKL is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
AOM40874.1Amino acid ABC transporter permease; With GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
A9255_11740Oligopeptide ABC transporter substrate-binding protein OppA; Is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)
AOM41193.1Oligopeptide ABC transporter substrate-binding protein OppA; Is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
AOM41194.1Oligopeptide ABC transporter substrate-binding protein OppA; Is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)
AOM42875.1Oligopeptide ABC transporter substrate-binding protein OppA; Is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
AOM41197.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
AOM41200.1Porin; Allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
AOM42884.1Molecular chaperone TorD; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
potAPutrescine/spermidine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (371 aa)
AOM41470.1Lipopolysaccharide ABC transporter permease LptG; With LptABCF is involved in the transport of lipopolysaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
AOM41471.1Lipopolysaccharide ABC transporter permease LptF; With LptBGC is involved in lipopolysaccharide export; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
AOM41480.1Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
AOM41509.1Antibiotic ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
btuBTonB-dependent vitamin B12 receptor; Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans- periplasmic membrane protein TonB; Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily. (604 aa)
atpCF0F1 ATP synthase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane. (140 aa)
atpDF0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (460 aa)
atpGF0F1 ATP synthase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (287 aa)
atpAF0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. (513 aa)
atpHATP synthase F1 subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (177 aa)
atpF-2F0F1 ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (156 aa)
atpEATP F0F1 synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (81 aa)
atpBF0F1 ATP synthase subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. (274 aa)
AOM41913.1Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (348 aa)
AOM41918.1Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
AOM41919.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
AOM41956.1Peptide ABC transporter substrate-binding protein; DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology. (536 aa)
AOM41969.1Hemolysin activation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (561 aa)
AOM42008.1Autoinducer 2-binding protein lsrB; With lsrACD is involved in the transport of autoinducer 2 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
lamBMaltoporin; Porin involved in the transport of maltose and maltodextrins; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
malFWith MalKGE is involved in maltose transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
frdDFumarate reductase; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane. (117 aa)
frdCFumarate reductase subunit C; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane. (131 aa)
AOM42149.1LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
AOM42941.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
tatAPreprotein translocase subunit TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (84 aa)
tatBTwin arginine-targeting protein translocase TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. (165 aa)
tatCTwin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. (262 aa)
fbpCFerric transporter ATP-binding subunit; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. (346 aa)
AOM42535.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
Your Current Organism:
Xenorhabdus hominickii
NCBI taxonomy Id: 351679
Other names: CIP 109072, DSM 17903, X. hominickii, Xenorhabdus hominickii Taillez et al. 2006, Xenorhabdus sp. KE01, Xenorhabdus sp. KR01, Xenorhabdus sp. KR05, strain KE01
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