(15 nodes) U2 snRNP, and U1 snRNP network (Cryptosporidium parvum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cgd7_3970	Small nuclear ribonucleoprotein, putative. (62 aa)
	cgd3_2310	RRM domain-containing protein. (86 aa)
	cgd1_2690	Sm domain-containing protein. (67 aa)
	cgd1_2910	Sm domain-containing protein. (139 aa)
	cgd4_1660	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	cgd4_3190	Small nuclear ribonucleoprotein Sm D2. (106 aa)
	cgd4_890	Uncharacterized protein. (85 aa)
	cgd5_4060	Matrin-type domain-containing protein. (198 aa)
	cgd5_2220	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (137 aa)
	cgd1_2250	Small nuclear ribonucleoprotein Sm D3. (143 aa)
	cgd2_3510	Cus1p U2 snRNP protein. (602 aa)
	cgd8_4240	Possible spliceosome factor. (1317 aa)
	cgd6_4750	Splicing factor 3B subunit1-like HEAT repeat containing protein. (1031 aa)
	cgd6_4490	RRM domain containing protein. (216 aa)
	cgd6_990	RRM domain containing protein. (281 aa)

Your Current Organism:

Cryptosporidium parvum

NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cgd1_2250	cgd1_2690	Q5CSL0	A3FQF0	Small nuclear ribonucleoprotein Sm D3.	Sm domain-containing protein.	0.999
cgd1_2250	cgd1_2910	Q5CSL0	A3FQF4	Small nuclear ribonucleoprotein Sm D3.	Sm domain-containing protein.	0.999
cgd1_2250	cgd2_3510	Q5CSL0	Q5CTD1	Small nuclear ribonucleoprotein Sm D3.	Cus1p U2 snRNP protein.	0.990
cgd1_2250	cgd3_2310	Q5CSL0	A3FQ28	Small nuclear ribonucleoprotein Sm D3.	RRM domain-containing protein.	0.907
cgd1_2250	cgd4_1660	Q5CSL0	A3FQK4	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
cgd1_2250	cgd4_3190	Q5CSL0	A3FQL7	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D2.	0.999
cgd1_2250	cgd4_890	Q5CSL0	A3FQN7	Small nuclear ribonucleoprotein Sm D3.	Uncharacterized protein.	0.981
cgd1_2250	cgd5_2220	Q5CSL0	Q5CRM6	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
cgd1_2250	cgd5_4060	Q5CSL0	Q5CQ56	Small nuclear ribonucleoprotein Sm D3.	Matrin-type domain-containing protein.	0.997
cgd1_2250	cgd6_4490	Q5CSL0	Q5CWM4	Small nuclear ribonucleoprotein Sm D3.	RRM domain containing protein.	0.968
cgd1_2250	cgd6_4750	Q5CSL0	Q5CWK2	Small nuclear ribonucleoprotein Sm D3.	Splicing factor 3B subunit1-like HEAT repeat containing protein.	0.973
cgd1_2250	cgd6_990	Q5CSL0	Q5CXI3	Small nuclear ribonucleoprotein Sm D3.	RRM domain containing protein.	0.998
cgd1_2250	cgd7_3970	Q5CSL0	A3FPQ3	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein, putative.	0.999
cgd1_2250	cgd8_4240	Q5CSL0	Q5CVF5	Small nuclear ribonucleoprotein Sm D3.	Possible spliceosome factor.	0.976
cgd1_2690	cgd1_2250	A3FQF0	Q5CSL0	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.999
cgd1_2690	cgd1_2910	A3FQF0	A3FQF4	Sm domain-containing protein.	Sm domain-containing protein.	0.999
cgd1_2690	cgd2_3510	A3FQF0	Q5CTD1	Sm domain-containing protein.	Cus1p U2 snRNP protein.	0.989
cgd1_2690	cgd3_2310	A3FQF0	A3FQ28	Sm domain-containing protein.	RRM domain-containing protein.	0.930
cgd1_2690	cgd4_1660	A3FQF0	A3FQK4	Sm domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
cgd1_2690	cgd4_3190	A3FQF0	A3FQL7	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.999