(11 nodes) U4/U6 x U5 tri-snRNP complex, and U5 snRNA binding network (Cryptosporidium parvum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cgd3_3690	U5 snRNP 100 kD protein, putative; Belongs to the DEAD box helicase family. (529 aa)
	cgd5_1130	WD-40 repeat protein family / small nuclear ribonucleoprotein Prp4p-related. (439 aa)
	cgd4_150	Pre-mRNA splicing protein Prp31p--like. (463 aa)
	cgd4_3140	WD repeat protein. (343 aa)
	cgd4_1570	Uncharacterized protein. (407 aa)
	cgd5_1740	Conserved protein, possible U4/U6 associated RNA splicing factor. (452 aa)
	cgd5_920	Pre-mRNA splicing factor Pro1/Prp6. HAT repeat protein. (923 aa)
	cgd3_3880	Snu114p GTpase, U5 snRNP-specific protein, 116 kDa. (1035 aa)
	cgd3_2890	Prp8. JAB/PAD domain. (2379 aa)
	cgd3_1060	U1 like C2H2 zinc finger. (198 aa)
	cgd8_3690	Mitosis protein DIM1. (142 aa)

Your Current Organism:

Cryptosporidium parvum

NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cgd3_1060	cgd3_2890	Q5CUY0	Q5CUG7	U1 like C2H2 zinc finger.	Prp8. JAB/PAD domain.	0.910
cgd3_1060	cgd3_3690	Q5CUY0	A3FQ46	U1 like C2H2 zinc finger.	U5 snRNP 100 kD protein, putative; Belongs to the DEAD box helicase family.	0.708
cgd3_1060	cgd3_3880	Q5CUY0	Q5CU80	U1 like C2H2 zinc finger.	Snu114p GTpase, U5 snRNP-specific protein, 116 kDa.	0.961
cgd3_1060	cgd4_150	Q5CUY0	Q5CQM4	U1 like C2H2 zinc finger.	Pre-mRNA splicing protein Prp31p--like.	0.952
cgd3_1060	cgd4_1570	Q5CUY0	Q5CR99	U1 like C2H2 zinc finger.	Uncharacterized protein.	0.998
cgd3_1060	cgd4_3140	Q5CUY0	Q5CQV4	U1 like C2H2 zinc finger.	WD repeat protein.	0.583
cgd3_1060	cgd5_1130	Q5CUY0	A3FQH7	U1 like C2H2 zinc finger.	WD-40 repeat protein family / small nuclear ribonucleoprotein Prp4p-related.	0.966
cgd3_1060	cgd5_1740	Q5CUY0	Q5CRR8	U1 like C2H2 zinc finger.	Conserved protein, possible U4/U6 associated RNA splicing factor.	0.978
cgd3_1060	cgd5_920	Q5CUY0	Q5CRZ2	U1 like C2H2 zinc finger.	Pre-mRNA splicing factor Pro1/Prp6. HAT repeat protein.	0.982
cgd3_1060	cgd8_3690	Q5CUY0	Q5CVK8	U1 like C2H2 zinc finger.	Mitosis protein DIM1.	0.970
cgd3_2890	cgd3_1060	Q5CUG7	Q5CUY0	Prp8. JAB/PAD domain.	U1 like C2H2 zinc finger.	0.910
cgd3_2890	cgd3_3690	Q5CUG7	A3FQ46	Prp8. JAB/PAD domain.	U5 snRNP 100 kD protein, putative; Belongs to the DEAD box helicase family.	0.999
cgd3_2890	cgd3_3880	Q5CUG7	Q5CU80	Prp8. JAB/PAD domain.	Snu114p GTpase, U5 snRNP-specific protein, 116 kDa.	0.999
cgd3_2890	cgd4_150	Q5CUG7	Q5CQM4	Prp8. JAB/PAD domain.	Pre-mRNA splicing protein Prp31p--like.	0.998
cgd3_2890	cgd4_1570	Q5CUG7	Q5CR99	Prp8. JAB/PAD domain.	Uncharacterized protein.	0.997
cgd3_2890	cgd4_3140	Q5CUG7	Q5CQV4	Prp8. JAB/PAD domain.	WD repeat protein.	0.999
cgd3_2890	cgd5_1130	Q5CUG7	A3FQH7	Prp8. JAB/PAD domain.	WD-40 repeat protein family / small nuclear ribonucleoprotein Prp4p-related.	0.994
cgd3_2890	cgd5_1740	Q5CUG7	Q5CRR8	Prp8. JAB/PAD domain.	Conserved protein, possible U4/U6 associated RNA splicing factor.	0.998
cgd3_2890	cgd5_920	Q5CUG7	Q5CRZ2	Prp8. JAB/PAD domain.	Pre-mRNA splicing factor Pro1/Prp6. HAT repeat protein.	0.999
cgd3_2890	cgd8_3690	Q5CUG7	Q5CVK8	Prp8. JAB/PAD domain.	Mitosis protein DIM1.	0.999