(18 nodes) TRAPP complex, and ER to Golgi transport vesicle membrane network (Cryptosporidium parvum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cgd6_3740	41-2 protein antigen. (171 aa)
	cgd8_4110	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (601 aa)
	cgd8_4470	Uncharacterized protein. (874 aa)
	cgd8_5070	Uncharacterized protein. (142 aa)
	cgd3_2700	Trafficking protein particle complex subunit 6B, putative. (210 aa)
	cgd2_4330	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (137 aa)
	cgd4_1120	WD40 repeat containing protein that has a transmembrane region at the C-terminus. (449 aa)
	cgd4_260	WD repeat protein. (1359 aa)
	cgd2_3760	Uncharacterized protein. (150 aa)
	cgd2_1280	DDHD domain-containing protein. (685 aa)
	cgd3_1820	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (758 aa)
	cgd8_3650	Predicted DM-LD37668p. (308 aa)
	cgd8_1250	SEC24C-like component of COPII coatamer of ER-golgi vesicles. (1150 aa)
	cgd6_5140	Lectin, mannose-binding 1. (469 aa)
	cgd6_4310	Putative low complexity. (1931 aa)
	cgd6_3220	RAS small GTpases RIC1/ypt1. (203 aa)
	cgd7_2330	SAR1-like small GTpase; Belongs to the small GTPase superfamily. SAR1 family. (211 aa)
	cgd7_1820	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (206 aa)

Your Current Organism:

Cryptosporidium parvum

NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cgd2_1280	cgd3_1820	Q5CTW6	Q5CUR1	DDHD domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.816
cgd2_1280	cgd4_260	Q5CTW6	Q5CQL4	DDHD domain-containing protein.	WD repeat protein.	0.820
cgd2_1280	cgd6_5140	Q5CTW6	Q5CWG8	DDHD domain-containing protein.	Lectin, mannose-binding 1.	0.601
cgd2_1280	cgd7_2330	Q5CTW6	Q5CYH4	DDHD domain-containing protein.	SAR1-like small GTpase; Belongs to the small GTPase superfamily. SAR1 family.	0.660
cgd2_1280	cgd8_1250	Q5CTW6	Q5CW87	DDHD domain-containing protein.	SEC24C-like component of COPII coatamer of ER-golgi vesicles.	0.675
cgd2_1280	cgd8_4110	Q5CTW6	A3FPZ9	DDHD domain-containing protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.817
cgd2_1280	cgd8_4470	Q5CTW6	A3FQ03	DDHD domain-containing protein.	Uncharacterized protein.	0.792
cgd2_3760	cgd2_4330	Q5CTA8	A3FQA9	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.999
cgd2_3760	cgd3_1820	Q5CTA8	Q5CUR1	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.669
cgd2_3760	cgd3_2700	Q5CTA8	A3FQ35	Uncharacterized protein.	Trafficking protein particle complex subunit 6B, putative.	0.999
cgd2_3760	cgd4_260	Q5CTA8	Q5CQL4	Uncharacterized protein.	WD repeat protein.	0.611
cgd2_3760	cgd6_3220	Q5CTA8	Q5CWY7	Uncharacterized protein.	RAS small GTpases RIC1/ypt1.	0.691
cgd2_3760	cgd6_3740	Q5CTA8	A3FPW1	Uncharacterized protein.	41-2 protein antigen.	0.999
cgd2_3760	cgd6_4310	Q5CTA8	Q5CWP1	Uncharacterized protein.	Putative low complexity.	0.999
cgd2_3760	cgd7_1820	Q5CTA8	Q5CYM1	Uncharacterized protein.	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.999
cgd2_3760	cgd8_1250	Q5CTA8	Q5CW87	Uncharacterized protein.	SEC24C-like component of COPII coatamer of ER-golgi vesicles.	0.652
cgd2_3760	cgd8_3650	Q5CTA8	Q5CVL2	Uncharacterized protein.	Predicted DM-LD37668p.	0.995
cgd2_3760	cgd8_4110	Q5CTA8	A3FPZ9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.590
cgd2_3760	cgd8_5070	Q5CTA8	A3FQ09	Uncharacterized protein.	Uncharacterized protein.	0.999
cgd2_4330	cgd2_3760	A3FQA9	Q5CTA8	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	Uncharacterized protein.	0.999