(13 nodes) P-body network (Cryptosporidium parvum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cgd4_2710	Uncharacterized protein. (77 aa)
	cgd5_3890	Possible apicomplexan specific, low complexity protein. (324 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (160 aa)
	cgd2_3220	Sc6p-like, SM domain. (377 aa)
	cgd3_4320	RPOL4c domain-containing protein. (124 aa)
	cgd3_350	Pop2p-like 3'5' exonuclease, CCR4-NOT transcription complex. (277 aa)
	cgd7_2790	Regena domain protein (CCR-Not complex protein subunit 3), putative. (394 aa)
	cgd7_2710	Ataxin2 related nudix domain protein (RNA processing phosphatase/ATpase domain). (651 aa)
	cgd7_2040	Small nuclear ribonucleo protein. (93 aa)
	cgd7_1070	SnRNP core protein. (107 aa)
	cgd8_1820	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (406 aa)
	cgd8_4460	Cell differentiation protein rcd1, putative. (390 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)

Your Current Organism:

Cryptosporidium parvum

NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	LSM3	Q5CQ90	Q5CYX1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM1	cgd2_3220	Q5CQ90	Q5CTF6	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Sc6p-like, SM domain.	0.805
LSM1	cgd3_350	Q5CQ90	Q5CV44	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Pop2p-like 3'5' exonuclease, CCR4-NOT transcription complex.	0.439
LSM1	cgd4_2710	Q5CQ90	A3FQL4	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Uncharacterized protein.	0.999
LSM1	cgd5_3890	Q5CQ90	Q5CQ73	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Possible apicomplexan specific, low complexity protein.	0.917
LSM1	cgd7_1070	Q5CQ90	Q5CYT7	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	SnRNP core protein.	0.999
LSM1	cgd7_2040	Q5CQ90	Q5CYJ9	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Small nuclear ribonucleo protein.	0.999
LSM1	cgd7_2710	Q5CQ90	Q5CYD9	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Ataxin2 related nudix domain protein (RNA processing phosphatase/ATpase domain).	0.959
LSM1	cgd8_1820	Q5CQ90	A3FPY4	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	0.999
LSM3	LSM1	Q5CYX1	Q5CQ90	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.999
LSM3	cgd2_3220	Q5CYX1	Q5CTF6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sc6p-like, SM domain.	0.475
LSM3	cgd4_2710	Q5CYX1	A3FQL4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.999
LSM3	cgd5_3890	Q5CYX1	Q5CQ73	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Possible apicomplexan specific, low complexity protein.	0.835
LSM3	cgd7_1070	Q5CYX1	Q5CYT7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	SnRNP core protein.	0.999
LSM3	cgd7_2040	Q5CYX1	Q5CYJ9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleo protein.	0.999
LSM3	cgd7_2710	Q5CYX1	Q5CYD9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ataxin2 related nudix domain protein (RNA processing phosphatase/ATpase domain).	0.908
LSM3	cgd8_1820	Q5CYX1	A3FPY4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	0.849
cgd2_3220	LSM1	Q5CTF6	Q5CQ90	Sc6p-like, SM domain.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.805
cgd2_3220	LSM3	Q5CTF6	Q5CYX1	Sc6p-like, SM domain.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.475
cgd2_3220	cgd4_2710	Q5CTF6	A3FQL4	Sc6p-like, SM domain.	Uncharacterized protein.	0.627