(11 nodes) snRNA binding network (Cryptosporidium parvum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cgd3_1880	Protein with 2x rrm domains. (1142 aa)
	cgd7_5160	U1 small nuclear ribonucleoprotein A, rrm domain. (122 aa)
	cgd7_5320	Cwf5-like with 2 ZnR domains (CCCH and RRM domains missing). (186 aa)
	cgd6_990	RRM domain containing protein. (281 aa)
	cgd8_4240	Possible spliceosome factor. (1317 aa)
	cgd3_2880	U2 small nuclear ribonucleoprotein A' like LRR repeats. (257 aa)
	cgd3_2890	Prp8. JAB/PAD domain. (2379 aa)
	cgd3_3880	Snu114p GTpase, U5 snRNP-specific protein, 116 kDa. (1035 aa)
	cgd5_4060	Matrin-type domain-containing protein. (198 aa)
	cgd4_2710	Uncharacterized protein. (77 aa)
	cgd6_2150	U1 snrnp, putative. (267 aa)

Your Current Organism:

Cryptosporidium parvum

NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cgd3_1880	cgd3_2890	Q5CUQ5	Q5CUG7	Protein with 2x rrm domains.	Prp8. JAB/PAD domain.	0.457
cgd3_1880	cgd3_3880	Q5CUQ5	Q5CU80	Protein with 2x rrm domains.	Snu114p GTpase, U5 snRNP-specific protein, 116 kDa.	0.654
cgd3_1880	cgd4_2710	Q5CUQ5	A3FQL4	Protein with 2x rrm domains.	Uncharacterized protein.	0.995
cgd3_1880	cgd5_4060	Q5CUQ5	Q5CQ56	Protein with 2x rrm domains.	Matrin-type domain-containing protein.	0.524
cgd3_1880	cgd6_990	Q5CUQ5	Q5CXI3	Protein with 2x rrm domains.	RRM domain containing protein.	0.419
cgd3_1880	cgd7_5320	Q5CUQ5	Q5CXQ5	Protein with 2x rrm domains.	Cwf5-like with 2 ZnR domains (CCCH and RRM domains missing).	0.437
cgd3_2880	cgd3_2890	Q5CUG8	Q5CUG7	U2 small nuclear ribonucleoprotein A' like LRR repeats.	Prp8. JAB/PAD domain.	0.995
cgd3_2880	cgd3_3880	Q5CUG8	Q5CU80	U2 small nuclear ribonucleoprotein A' like LRR repeats.	Snu114p GTpase, U5 snRNP-specific protein, 116 kDa.	0.996
cgd3_2880	cgd4_2710	Q5CUG8	A3FQL4	U2 small nuclear ribonucleoprotein A' like LRR repeats.	Uncharacterized protein.	0.933
cgd3_2880	cgd5_4060	Q5CUG8	Q5CQ56	U2 small nuclear ribonucleoprotein A' like LRR repeats.	Matrin-type domain-containing protein.	0.997
cgd3_2880	cgd6_2150	Q5CUG8	A3FPU3	U2 small nuclear ribonucleoprotein A' like LRR repeats.	U1 snrnp, putative.	0.967
cgd3_2880	cgd6_990	Q5CUG8	Q5CXI3	U2 small nuclear ribonucleoprotein A' like LRR repeats.	RRM domain containing protein.	0.997
cgd3_2880	cgd7_5160	Q5CUG8	Q5CXS1	U2 small nuclear ribonucleoprotein A' like LRR repeats.	U1 small nuclear ribonucleoprotein A, rrm domain.	0.967
cgd3_2880	cgd7_5320	Q5CUG8	Q5CXQ5	U2 small nuclear ribonucleoprotein A' like LRR repeats.	Cwf5-like with 2 ZnR domains (CCCH and RRM domains missing).	0.992
cgd3_2880	cgd8_4240	Q5CUG8	Q5CVF5	U2 small nuclear ribonucleoprotein A' like LRR repeats.	Possible spliceosome factor.	0.998
cgd3_2890	cgd3_1880	Q5CUG7	Q5CUQ5	Prp8. JAB/PAD domain.	Protein with 2x rrm domains.	0.457
cgd3_2890	cgd3_2880	Q5CUG7	Q5CUG8	Prp8. JAB/PAD domain.	U2 small nuclear ribonucleoprotein A' like LRR repeats.	0.995
cgd3_2890	cgd3_3880	Q5CUG7	Q5CU80	Prp8. JAB/PAD domain.	Snu114p GTpase, U5 snRNP-specific protein, 116 kDa.	0.999
cgd3_2890	cgd4_2710	Q5CUG7	A3FQL4	Prp8. JAB/PAD domain.	Uncharacterized protein.	0.961
cgd3_2890	cgd5_4060	Q5CUG7	Q5CQ56	Prp8. JAB/PAD domain.	Matrin-type domain-containing protein.	0.667