(4 nodes) P-body assembly network (Cryptosporidium parvum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cgd8_1820	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (406 aa)
	cgd4_2710	Uncharacterized protein. (77 aa)
	cgd2_3220	Sc6p-like, SM domain. (377 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)

Your Current Organism:

Cryptosporidium parvum

NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	cgd2_3220	Q5CYX1	Q5CTF6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sc6p-like, SM domain.	0.475
LSM3	cgd4_2710	Q5CYX1	A3FQL4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.999
LSM3	cgd8_1820	Q5CYX1	A3FPY4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	0.849
cgd2_3220	LSM3	Q5CTF6	Q5CYX1	Sc6p-like, SM domain.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.475
cgd2_3220	cgd4_2710	Q5CTF6	A3FQL4	Sc6p-like, SM domain.	Uncharacterized protein.	0.627
cgd2_3220	cgd8_1820	Q5CTF6	A3FPY4	Sc6p-like, SM domain.	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	0.998
cgd4_2710	LSM3	A3FQL4	Q5CYX1	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
cgd4_2710	cgd2_3220	A3FQL4	Q5CTF6	Uncharacterized protein.	Sc6p-like, SM domain.	0.627
cgd4_2710	cgd8_1820	A3FQL4	A3FPY4	Uncharacterized protein.	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	0.950
cgd8_1820	LSM3	A3FPY4	Q5CYX1	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.849
cgd8_1820	cgd2_3220	A3FPY4	Q5CTF6	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	Sc6p-like, SM domain.	0.998
cgd8_1820	cgd4_2710	A3FPY4	A3FQL4	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.950