(28 nodes) Regulation of mRNA metabolic process network (Cryptosporidium parvum)

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Predicted Interactions

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Your Input:
	cgd4_1920	Endo/exonuclease/phosphatase domain-containing protein. (782 aa)
	Ms15p	Ms15p KH + 2 Znknuckle (C2HC). (471 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (160 aa)
	cgd5_3890	Possible apicomplexan specific, low complexity protein. (324 aa)
	cgd8_340	Exoribonuclease PH, putative. (295 aa)
	cgd4_3410	RNA binding protein, putative. (906 aa)
	cgd3_780	KH_dom_type_1 domain-containing protein. (211 aa)
	cgd8_2980	KH_dom_type_1 domain-containing protein. (144 aa)
	cgd7_230	RPR45-like archaeo-eukaryotic exosomal RNAse PH. (291 aa)
	cgd7_720	PASILLA splice variant 3-like 2KH domains, transmembrane domain at C-terminus. (364 aa)
	cgd7_760	Bruno-like protein with 2 RRM domains. (690 aa)
	cgd7_2380	RRP45-like archaeo-eukaryotic exosomal rnase, PH domain. (432 aa)
	cgd7_2710	Ataxin2 related nudix domain protein (RNA processing phosphatase/ATpase domain). (651 aa)
	cgd7_2790	Regena domain protein (CCR-Not complex protein subunit 3), putative. (394 aa)
	cgd6_2060	Cdc39p protein-like C-terminal Not1, CCR4-Not complex component Not1. (2664 aa)
	cgd6_3810	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (277 aa)
	cgd8_3340	PWI domain containing protein that is typically seen in spliceosomal proteins. (316 aa)
	cgd8_4910	PAN2 family 3'5' exonuclease, UBC hydrolase (Inactive) plus nuclease. (1936 aa)
	cgd3_350	Pop2p-like 3'5' exonuclease, CCR4-NOT transcription complex. (277 aa)
	cgd3_1230	SPAC14C4.06c-like PWI+4CCCH domains. (369 aa)
	cgd3_3070	WD-40 repeat protein, SMART LisH domain. (595 aa)
	cgd3_4320	RPOL4c domain-containing protein. (124 aa)
	cgd2_1000	Bruno-like, RRM domain RNA binding protein. (639 aa)
	cgd2_3340	Ser/Thr protein kinase. (773 aa)
	cgd1_2730	Ro ribonucleoprotein-binding protein 1, RNA binding protein with 3x RRM domains. (693 aa)
	cgd1_2960	Protein kinase CMGC group, Sky1p like S/T protein kinase probably involved in RNA metabolism. (765 aa)
	cgd5_1330	SPAC25G10.01-like RRM domain containing protein. (253 aa)
	cgd4_1850	RNase. (689 aa)

Your Current Organism:

Cryptosporidium parvum

NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	cgd3_350	Q5CQ90	Q5CV44	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Pop2p-like 3'5' exonuclease, CCR4-NOT transcription complex.	0.439
LSM1	cgd4_1850	Q5CQ90	Q5CR73	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	RNase.	0.455
LSM1	cgd4_1920	Q5CQ90	Q5CR66	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Endo/exonuclease/phosphatase domain-containing protein.	0.455
LSM1	cgd5_3890	Q5CQ90	Q5CQ73	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Possible apicomplexan specific, low complexity protein.	0.917
LSM1	cgd6_2060	Q5CQ90	Q5CX88	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Cdc39p protein-like C-terminal Not1, CCR4-Not complex component Not1.	0.655
LSM1	cgd7_2710	Q5CQ90	Q5CYD9	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Ataxin2 related nudix domain protein (RNA processing phosphatase/ATpase domain).	0.959
LSM1	cgd8_4910	Q5CQ90	Q5CV96	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	PAN2 family 3'5' exonuclease, UBC hydrolase (Inactive) plus nuclease.	0.451
Ms15p	cgd1_2730	Q5CQD0	Q5CSH1	Ms15p KH + 2 Znknuckle (C2HC).	Ro ribonucleoprotein-binding protein 1, RNA binding protein with 3x RRM domains.	0.573
Ms15p	cgd1_2960	Q5CQD0	Q5CSF5	Ms15p KH + 2 Znknuckle (C2HC).	Protein kinase CMGC group, Sky1p like S/T protein kinase probably involved in RNA metabolism.	0.618
Ms15p	cgd7_720	Q5CQD0	Q5CYW9	Ms15p KH + 2 Znknuckle (C2HC).	PASILLA splice variant 3-like 2KH domains, transmembrane domain at C-terminus.	0.524
Ms15p	cgd8_3340	Q5CQD0	Q5CVP0	Ms15p KH + 2 Znknuckle (C2HC).	PWI domain containing protein that is typically seen in spliceosomal proteins.	0.487
cgd1_2730	Ms15p	Q5CSH1	Q5CQD0	Ro ribonucleoprotein-binding protein 1, RNA binding protein with 3x RRM domains.	Ms15p KH + 2 Znknuckle (C2HC).	0.573
cgd1_2960	Ms15p	Q5CSF5	Q5CQD0	Protein kinase CMGC group, Sky1p like S/T protein kinase probably involved in RNA metabolism.	Ms15p KH + 2 Znknuckle (C2HC).	0.618
cgd1_2960	cgd8_3340	Q5CSF5	Q5CVP0	Protein kinase CMGC group, Sky1p like S/T protein kinase probably involved in RNA metabolism.	PWI domain containing protein that is typically seen in spliceosomal proteins.	0.423
cgd2_3340	cgd3_350	Q5CTE5	Q5CV44	Ser/Thr protein kinase.	Pop2p-like 3'5' exonuclease, CCR4-NOT transcription complex.	0.659
cgd2_3340	cgd4_1850	Q5CTE5	Q5CR73	Ser/Thr protein kinase.	RNase.	0.522
cgd2_3340	cgd4_1920	Q5CTE5	Q5CR66	Ser/Thr protein kinase.	Endo/exonuclease/phosphatase domain-containing protein.	0.522
cgd2_3340	cgd5_3890	Q5CTE5	Q5CQ73	Ser/Thr protein kinase.	Possible apicomplexan specific, low complexity protein.	0.400
cgd2_3340	cgd6_2060	Q5CTE5	Q5CX88	Ser/Thr protein kinase.	Cdc39p protein-like C-terminal Not1, CCR4-Not complex component Not1.	0.426
cgd2_3340	cgd8_4910	Q5CTE5	Q5CV96	Ser/Thr protein kinase.	PAN2 family 3'5' exonuclease, UBC hydrolase (Inactive) plus nuclease.	0.999