(11 nodes) AAA ATPase, AAA+ lid domain network (Cryptosporidium parvum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cgd6_920	26s protease regulatory subunit 8, putative; Belongs to the AAA ATPase family. (393 aa)
	cgd4_1170	26S proteasome regulatory subunit S4 like AAA ATpase; Belongs to the AAA ATPase family. (445 aa)
	cgd4_2540	26S proteasome regulatory subunit 26b like AAA ATpase; Belongs to the AAA ATPase family. (401 aa)
	cgd4_1730	CDC48 like AAA ATpase. (891 aa)
	cgd5_2010	Nuclear VCP like protein with 2 AAA ATpase domains. (695 aa)
	cgd1_3360	Predicted AFG1 ATpase family AAA ATpase. (719 aa)
	cgd1_330	CDC48 like AAA ATPase ortholog. (820 aa)
	cgd2_3010	N-ethylmaleimide-sensitive factor (NSF1)-like AAA ATpase involved in vesicular transport. (747 aa)
	cgd8_840	26S proteasome regulatory subunit S10b like AAA+ ATpase; Belongs to the AAA ATPase family. (406 aa)
	cgd6_4350	26S proteasome regulatory subunit 7 (RPT1)-like; Belongs to the AAA ATPase family. (432 aa)
	cgd2_1350	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family. (461 aa)

Your Current Organism:

Cryptosporidium parvum

NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cgd1_330	cgd2_1350	Q5CT24	Q5CTW0	CDC48 like AAA ATPase ortholog.	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family.	0.679
cgd1_330	cgd4_1170	Q5CT24	Q5CQD4	CDC48 like AAA ATPase ortholog.	26S proteasome regulatory subunit S4 like AAA ATpase; Belongs to the AAA ATPase family.	0.663
cgd1_330	cgd4_2540	Q5CT24	Q5CR10	CDC48 like AAA ATPase ortholog.	26S proteasome regulatory subunit 26b like AAA ATpase; Belongs to the AAA ATPase family.	0.617
cgd1_330	cgd6_4350	Q5CT24	Q5CWN8	CDC48 like AAA ATPase ortholog.	26S proteasome regulatory subunit 7 (RPT1)-like; Belongs to the AAA ATPase family.	0.628
cgd1_330	cgd6_920	Q5CT24	A3FPS8	CDC48 like AAA ATPase ortholog.	26s protease regulatory subunit 8, putative; Belongs to the AAA ATPase family.	0.632
cgd1_330	cgd8_840	Q5CT24	Q5CWC6	CDC48 like AAA ATPase ortholog.	26S proteasome regulatory subunit S10b like AAA+ ATpase; Belongs to the AAA ATPase family.	0.573
cgd1_3360	cgd2_1350	Q5CSB7	Q5CTW0	Predicted AFG1 ATpase family AAA ATpase.	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family.	0.405
cgd2_1350	cgd1_330	Q5CTW0	Q5CT24	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family.	CDC48 like AAA ATPase ortholog.	0.679
cgd2_1350	cgd1_3360	Q5CTW0	Q5CSB7	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family.	Predicted AFG1 ATpase family AAA ATpase.	0.405
cgd2_1350	cgd2_3010	Q5CTW0	Q5CTH4	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family.	N-ethylmaleimide-sensitive factor (NSF1)-like AAA ATpase involved in vesicular transport.	0.447
cgd2_1350	cgd4_1170	Q5CTW0	Q5CQD4	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit S4 like AAA ATpase; Belongs to the AAA ATPase family.	0.999
cgd2_1350	cgd4_1730	Q5CTW0	Q5CR85	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family.	CDC48 like AAA ATpase.	0.679
cgd2_1350	cgd4_2540	Q5CTW0	Q5CR10	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit 26b like AAA ATpase; Belongs to the AAA ATPase family.	0.999
cgd2_1350	cgd5_2010	Q5CTW0	Q5CRP4	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family.	Nuclear VCP like protein with 2 AAA ATpase domains.	0.407
cgd2_1350	cgd6_4350	Q5CTW0	Q5CWN8	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit 7 (RPT1)-like; Belongs to the AAA ATPase family.	0.999
cgd2_1350	cgd6_920	Q5CTW0	A3FPS8	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family.	26s protease regulatory subunit 8, putative; Belongs to the AAA ATPase family.	0.999
cgd2_1350	cgd8_840	Q5CTW0	Q5CWC6	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit S10b like AAA+ ATpase; Belongs to the AAA ATPase family.	0.999
cgd2_3010	cgd2_1350	Q5CTH4	Q5CTW0	N-ethylmaleimide-sensitive factor (NSF1)-like AAA ATpase involved in vesicular transport.	26S proteasome regulatory subunit, S6a like AAA ATpase; Belongs to the AAA ATPase family.	0.447
cgd2_3010	cgd4_1170	Q5CTH4	Q5CQD4	N-ethylmaleimide-sensitive factor (NSF1)-like AAA ATpase involved in vesicular transport.	26S proteasome regulatory subunit S4 like AAA ATpase; Belongs to the AAA ATPase family.	0.484
cgd2_3010	cgd4_2540	Q5CTH4	Q5CR10	N-ethylmaleimide-sensitive factor (NSF1)-like AAA ATpase involved in vesicular transport.	26S proteasome regulatory subunit 26b like AAA ATpase; Belongs to the AAA ATPase family.	0.444