(14 nodes) Resolution of Sister Chromatid Cohesion network (Cryptosporidium parvum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cgd5_4070	Serine/threonine-protein phosphatase. (239 aa)
	cgd5_230	Uncharacterized protein. (464 aa)
	cgd6_4760	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (445 aa)
	cgd3_2960	Uncharacterized protein. (2691 aa)
	cgd3_3860	Coiled coil protein. (493 aa)
	cgd2_2750	Structural maintenance of chromosomes protein. (1349 aa)
	cgd5_1680	Protein with an N-terminal domain shared with the TOG/ALp4p ike microtubule associated proteins. (1359 aa)
	cgd4_290	Uncharacterized protein. (691 aa)
	cgd3_120	Uncharacterized protein. (228 aa)
	cgd7_290	RAD21-N-terminal like protein. (646 aa)
	cgd7_810	Serine/threonine-protein phosphatase. (322 aa)
	cgd7_2700	SMC3'SMC type chromosomal ABC ATpase. (1304 aa)
	cgd6_2930	Protein with possible stromal antigen (SA/STAG) domain. (1404 aa)
	cgd6_4140	Coiled coil protein. (696 aa)

Your Current Organism:

Cryptosporidium parvum

NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cgd2_2750	cgd5_1680	Q5CTJ4	Q5CRS4	Structural maintenance of chromosomes protein.	Protein with an N-terminal domain shared with the TOG/ALp4p ike microtubule associated proteins.	0.545
cgd2_2750	cgd6_2930	Q5CTJ4	Q5CX13	Structural maintenance of chromosomes protein.	Protein with possible stromal antigen (SA/STAG) domain.	0.999
cgd2_2750	cgd6_4140	Q5CTJ4	Q5CWQ6	Structural maintenance of chromosomes protein.	Coiled coil protein.	0.829
cgd2_2750	cgd7_2700	Q5CTJ4	Q5CYE0	Structural maintenance of chromosomes protein.	SMC3'SMC type chromosomal ABC ATpase.	0.999
cgd2_2750	cgd7_290	Q5CTJ4	Q5CZ09	Structural maintenance of chromosomes protein.	RAD21-N-terminal like protein.	0.999
cgd3_120	cgd3_2960	Q5CPG7	Q5CUG1	Uncharacterized protein.	Uncharacterized protein.	0.406
cgd3_120	cgd3_3860	Q5CPG7	Q5CU82	Uncharacterized protein.	Coiled coil protein.	0.999
cgd3_120	cgd5_230	Q5CPG7	A3FQG4	Uncharacterized protein.	Uncharacterized protein.	0.508
cgd3_120	cgd6_4140	Q5CPG7	Q5CWQ6	Uncharacterized protein.	Coiled coil protein.	0.999
cgd3_2960	cgd3_120	Q5CUG1	Q5CPG7	Uncharacterized protein.	Uncharacterized protein.	0.406
cgd3_2960	cgd3_3860	Q5CUG1	Q5CU82	Uncharacterized protein.	Coiled coil protein.	0.571
cgd3_2960	cgd5_230	Q5CUG1	A3FQG4	Uncharacterized protein.	Uncharacterized protein.	0.601
cgd3_2960	cgd6_4140	Q5CUG1	Q5CWQ6	Uncharacterized protein.	Coiled coil protein.	0.546
cgd3_3860	cgd3_120	Q5CU82	Q5CPG7	Coiled coil protein.	Uncharacterized protein.	0.999
cgd3_3860	cgd3_2960	Q5CU82	Q5CUG1	Coiled coil protein.	Uncharacterized protein.	0.571
cgd3_3860	cgd5_1680	Q5CU82	Q5CRS4	Coiled coil protein.	Protein with an N-terminal domain shared with the TOG/ALp4p ike microtubule associated proteins.	0.939
cgd3_3860	cgd5_230	Q5CU82	A3FQG4	Coiled coil protein.	Uncharacterized protein.	0.579
cgd3_3860	cgd6_4140	Q5CU82	Q5CWQ6	Coiled coil protein.	Coiled coil protein.	0.999
cgd3_3860	cgd6_4760	Q5CU82	Q5CWK1	Coiled coil protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.771
cgd4_290	cgd5_4070	Q5CQL1	A3FQP4	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.997