6 items (Cryptosporidium parvum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cgd2_810	Calmodulin; Belongs to the calmodulin family. (149 aa)
	cgd2_1700	2x Ef hands, calmodulin-like. (172 aa)
	cgd5_3920	Calmodulin-like protein. (220 aa)
	cgd1_2360	Serine/threonine-protein phosphatase. (304 aa)
	cgd8_980	EF-hand domain-containing protein. (76 aa)
	cgd3_3760	Small protein with possible EF hand domains, calmodulin like. (143 aa)

Your Current Organism:

Cryptosporidium parvum

NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cgd1_2360	cgd2_1700	A3FQE4	Q5CTT0	Serine/threonine-protein phosphatase.	2x Ef hands, calmodulin-like.	0.675
cgd1_2360	cgd2_810	A3FQE4	A3FQ56	Serine/threonine-protein phosphatase.	Calmodulin; Belongs to the calmodulin family.	0.675
cgd1_2360	cgd3_3760	A3FQE4	Q5CU91	Serine/threonine-protein phosphatase.	Small protein with possible EF hand domains, calmodulin like.	0.675
cgd1_2360	cgd5_3920	A3FQE4	Q5CQ70	Serine/threonine-protein phosphatase.	Calmodulin-like protein.	0.675
cgd1_2360	cgd8_980	A3FQE4	Q5CWB3	Serine/threonine-protein phosphatase.	EF-hand domain-containing protein.	0.719
cgd2_1700	cgd1_2360	Q5CTT0	A3FQE4	2x Ef hands, calmodulin-like.	Serine/threonine-protein phosphatase.	0.675
cgd2_1700	cgd2_810	Q5CTT0	A3FQ56	2x Ef hands, calmodulin-like.	Calmodulin; Belongs to the calmodulin family.	0.910
cgd2_1700	cgd3_3760	Q5CTT0	Q5CU91	2x Ef hands, calmodulin-like.	Small protein with possible EF hand domains, calmodulin like.	0.917
cgd2_1700	cgd5_3920	Q5CTT0	Q5CQ70	2x Ef hands, calmodulin-like.	Calmodulin-like protein.	0.947
cgd2_1700	cgd8_980	Q5CTT0	Q5CWB3	2x Ef hands, calmodulin-like.	EF-hand domain-containing protein.	0.928
cgd2_810	cgd1_2360	A3FQ56	A3FQE4	Calmodulin; Belongs to the calmodulin family.	Serine/threonine-protein phosphatase.	0.675
cgd2_810	cgd2_1700	A3FQ56	Q5CTT0	Calmodulin; Belongs to the calmodulin family.	2x Ef hands, calmodulin-like.	0.910
cgd2_810	cgd3_3760	A3FQ56	Q5CU91	Calmodulin; Belongs to the calmodulin family.	Small protein with possible EF hand domains, calmodulin like.	0.909
cgd2_810	cgd5_3920	A3FQ56	Q5CQ70	Calmodulin; Belongs to the calmodulin family.	Calmodulin-like protein.	0.910
cgd2_810	cgd8_980	A3FQ56	Q5CWB3	Calmodulin; Belongs to the calmodulin family.	EF-hand domain-containing protein.	0.906
cgd3_3760	cgd1_2360	Q5CU91	A3FQE4	Small protein with possible EF hand domains, calmodulin like.	Serine/threonine-protein phosphatase.	0.675
cgd3_3760	cgd2_1700	Q5CU91	Q5CTT0	Small protein with possible EF hand domains, calmodulin like.	2x Ef hands, calmodulin-like.	0.917
cgd3_3760	cgd2_810	Q5CU91	A3FQ56	Small protein with possible EF hand domains, calmodulin like.	Calmodulin; Belongs to the calmodulin family.	0.909
cgd3_3760	cgd5_3920	Q5CU91	Q5CQ70	Small protein with possible EF hand domains, calmodulin like.	Calmodulin-like protein.	0.939
cgd3_3760	cgd8_980	Q5CU91	Q5CWB3	Small protein with possible EF hand domains, calmodulin like.	EF-hand domain-containing protein.	0.934