5 items (Cryptosporidium parvum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cgd3_330	Scully CG7113-PA, putative; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (284 aa)
	cgd4_3400	Putative long chain fatty acyl CoA synthetase having a signal peptide. (766 aa)
	cgd5_3200	Putative acyl-CoA synthetase. (683 aa)
	cgd3_640	Acyl-CoA synthetase. (685 aa)
	cgd8_1720	Acetaldehyde reductase plus alcohol dehydrogenase (AdhE) of possible bacterial origin. (867 aa)

Your Current Organism:

Cryptosporidium parvum

NCBI taxonomy Id: 353152
Other names: C. parvum Iowa II, Cryptosporidium parvum Iowa II, Cryptosporidium parvum strain Iowa type II

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cgd3_640	cgd4_3400	Q5CV15	Q5CQT5	Acyl-CoA synthetase.	Putative long chain fatty acyl CoA synthetase having a signal peptide.	0.910
cgd3_640	cgd5_3200	Q5CV15	Q5CRD8	Acyl-CoA synthetase.	Putative acyl-CoA synthetase.	0.916
cgd4_3400	cgd3_640	Q5CQT5	Q5CV15	Putative long chain fatty acyl CoA synthetase having a signal peptide.	Acyl-CoA synthetase.	0.910
cgd4_3400	cgd5_3200	Q5CQT5	Q5CRD8	Putative long chain fatty acyl CoA synthetase having a signal peptide.	Putative acyl-CoA synthetase.	0.906
cgd5_3200	cgd3_640	Q5CRD8	Q5CV15	Putative acyl-CoA synthetase.	Acyl-CoA synthetase.	0.916
cgd5_3200	cgd4_3400	Q5CRD8	Q5CQT5	Putative acyl-CoA synthetase.	Putative long chain fatty acyl CoA synthetase having a signal peptide.	0.906