(32 nodes) Ubiquitin-like protein ligase binding network (Trypanosoma cruzi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Q4D5L7_TRYCC	Cullin 2, putative; Belongs to the cullin family. (810 aa)
	Q4DB05_TRYCC	CULLIN_2 domain-containing protein; Belongs to the cullin family. (696 aa)
	Q4DGF2_TRYCC	Cullin-like protein, putative; Belongs to the cullin family. (708 aa)
	Q4DGS4_TRYCC	Ubiquitin-like protein, putative. (622 aa)
	Q4DIR8_TRYCC	Small ubiquitin protein, putative. (107 aa)
	Q4DMX7_TRYCC	Uncharacterized protein. (393 aa)
	Q4DSQ4_TRYCC	Ubiquitin/ribosomal protein S27a, putative. (150 aa)
	Q4DSS5_TRYCC	Small ubiquitin protein, putative. (107 aa)
	Q4DVD1_TRYCC	CULLIN_2 domain-containing protein; Belongs to the cullin family. (1230 aa)
	Q4DZU8_TRYCC	Cullin-like protein, putative; Belongs to the cullin family. (709 aa)
	Q4E2J4_TRYCC	Uncharacterized protein. (304 aa)
	Q4E4Q7_TRYCC	CULLIN_2 domain-containing protein; Belongs to the cullin family. (767 aa)
	Q4CT96_TRYCC	Uncharacterized protein. (319 aa)
	Q4CTL9_TRYCC	Uncharacterized protein. (199 aa)
	Q4CTM0_TRYCC	CULLIN_2 domain-containing protein; Belongs to the cullin family. (909 aa)
	Q4CUC0_TRYCC	CULLIN_2 domain-containing protein; Belongs to the cullin family. (1228 aa)
	Q4CW84_TRYCC	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family. (1161 aa)
	Q4CX04_TRYCC	Ubiquitin/ribosomal protein S27a, putative. (209 aa)
	Q4CX32_TRYCC	MPN domain-containing protein. (393 aa)
	Q4CX33_TRYCC	CULLIN_2 domain-containing protein; Belongs to the cullin family. (910 aa)
	Q4CX65_TRYCC	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family. (1160 aa)
	Q4CXN0_TRYCC	Ubiquitin/ribosomal protein S27a, putative. (211 aa)
	Q4CZ35_TRYCC	Cullin, putative; Belongs to the cullin family. (741 aa)
	Q4D018_TRYCC	Cullin 2, putative; Belongs to the cullin family. (489 aa)
	Q4D1T6_TRYCC	Ubiquitin/ribosomal protein S27a, putative. (150 aa)
	Q4DAM9_TRYCC	Uncharacterized protein. (392 aa)
	Q4D7Q2_TRYCC	Uncharacterized protein. (319 aa)
	Q4D7M1_TRYCC	Uncharacterized protein. (158 aa)
	Q4D6K0_TRYCC	Ubiquitin-like protein, putative. (624 aa)
	Q4D345_TRYCC	Uncharacterized protein. (319 aa)
	Q4D3Q0_TRYCC	Uncharacterized protein. (319 aa)
	Q4CRP5_TRYCC	CULLIN_2 domain-containing protein; Belongs to the cullin family. (1017 aa)

Your Current Organism:

Trypanosoma cruzi

NCBI taxonomy Id: 353153
Other names: T. cruzi strain CL Brener, Trypanosoma cruzi strain CL Brener

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Q4CRP5_TRYCC	Q4CX04_TRYCC	Q4CRP5	Q4CX04	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin/ribosomal protein S27a, putative.	0.426
Q4CRP5_TRYCC	Q4CXN0_TRYCC	Q4CRP5	Q4CXN0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin/ribosomal protein S27a, putative.	0.426
Q4CRP5_TRYCC	Q4D1T6_TRYCC	Q4CRP5	Q4D1T6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin/ribosomal protein S27a, putative.	0.426
Q4CRP5_TRYCC	Q4D6K0_TRYCC	Q4CRP5	Q4D6K0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like protein, putative.	0.426
Q4CRP5_TRYCC	Q4DGS4_TRYCC	Q4CRP5	Q4DGS4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like protein, putative.	0.426
Q4CRP5_TRYCC	Q4DIR8_TRYCC	Q4CRP5	Q4DIR8	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Small ubiquitin protein, putative.	0.647
Q4CRP5_TRYCC	Q4DSQ4_TRYCC	Q4CRP5	Q4DSQ4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin/ribosomal protein S27a, putative.	0.426
Q4CRP5_TRYCC	Q4DSS5_TRYCC	Q4CRP5	Q4DSS5	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Small ubiquitin protein, putative.	0.647
Q4CTL9_TRYCC	Q4CX04_TRYCC	Q4CTL9	Q4CX04	Uncharacterized protein.	Ubiquitin/ribosomal protein S27a, putative.	0.747
Q4CTL9_TRYCC	Q4CXN0_TRYCC	Q4CTL9	Q4CXN0	Uncharacterized protein.	Ubiquitin/ribosomal protein S27a, putative.	0.747
Q4CTL9_TRYCC	Q4D1T6_TRYCC	Q4CTL9	Q4D1T6	Uncharacterized protein.	Ubiquitin/ribosomal protein S27a, putative.	0.747
Q4CTL9_TRYCC	Q4D6K0_TRYCC	Q4CTL9	Q4D6K0	Uncharacterized protein.	Ubiquitin-like protein, putative.	0.747
Q4CTL9_TRYCC	Q4DGS4_TRYCC	Q4CTL9	Q4DGS4	Uncharacterized protein.	Ubiquitin-like protein, putative.	0.747
Q4CTL9_TRYCC	Q4DSQ4_TRYCC	Q4CTL9	Q4DSQ4	Uncharacterized protein.	Ubiquitin/ribosomal protein S27a, putative.	0.747
Q4CTM0_TRYCC	Q4CUC0_TRYCC	Q4CTM0	Q4CUC0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.474
Q4CTM0_TRYCC	Q4CX04_TRYCC	Q4CTM0	Q4CX04	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin/ribosomal protein S27a, putative.	0.426
Q4CTM0_TRYCC	Q4CXN0_TRYCC	Q4CTM0	Q4CXN0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin/ribosomal protein S27a, putative.	0.426
Q4CTM0_TRYCC	Q4CZ35_TRYCC	Q4CTM0	Q4CZ35	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin, putative; Belongs to the cullin family.	0.618
Q4CTM0_TRYCC	Q4D018_TRYCC	Q4CTM0	Q4D018	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin 2, putative; Belongs to the cullin family.	0.550
Q4CTM0_TRYCC	Q4D1T6_TRYCC	Q4CTM0	Q4D1T6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin/ribosomal protein S27a, putative.	0.426