(11 nodes) Vps4 C terminal oligomerisation domain network (Trypanosoma cruzi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Q4CSI8_TRYCC	Katanin-like protein, putative; Belongs to the AAA ATPase family. (158 aa)
	KATNA1-3	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays. (681 aa)
	Q4DNT6_TRYCC	Vacuolar transport protein 4A, putative; Belongs to the AAA ATPase family. (448 aa)
	KATNA1-2	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays. (681 aa)
	KATNAL2	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. (592 aa)
	Q4D4Y6_TRYCC	Katanin-like protein, putative; Belongs to the AAA ATPase family. (923 aa)
	Q4CXI9_TRYCC	Katanin, putative; Belongs to the AAA ATPase family. (239 aa)
	Q4E658_TRYCC	Katanin-like protein, putative; Belongs to the AAA ATPase family. (444 aa)
	KATNAL2-2	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. (588 aa)
	Q4DFV8_TRYCC	Vesicular transport protein (CDC48 homologue), putative; Belongs to the AAA ATPase family. (248 aa)
	KATNA1	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays. (558 aa)

Your Current Organism:

Trypanosoma cruzi

NCBI taxonomy Id: 353153
Other names: T. cruzi strain CL Brener, Trypanosoma cruzi strain CL Brener

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KATNAL2	KATNAL2-2	Q4D5V3	Q4DIH8	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.741
KATNAL2	Q4DNT6_TRYCC	Q4D5V3	Q4DNT6	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Vacuolar transport protein 4A, putative; Belongs to the AAA ATPase family.	0.432
KATNAL2	Q4E658_TRYCC	Q4D5V3	Q4E658	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Katanin-like protein, putative; Belongs to the AAA ATPase family.	0.404
KATNAL2-2	KATNAL2	Q4DIH8	Q4D5V3	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.741
KATNAL2-2	Q4DNT6_TRYCC	Q4DIH8	Q4DNT6	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Vacuolar transport protein 4A, putative; Belongs to the AAA ATPase family.	0.432
KATNAL2-2	Q4E658_TRYCC	Q4DIH8	Q4E658	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Katanin-like protein, putative; Belongs to the AAA ATPase family.	0.404
Q4D4Y6_TRYCC	Q4DNT6_TRYCC	Q4D4Y6	Q4DNT6	Katanin-like protein, putative; Belongs to the AAA ATPase family.	Vacuolar transport protein 4A, putative; Belongs to the AAA ATPase family.	0.427
Q4DNT6_TRYCC	KATNAL2	Q4DNT6	Q4D5V3	Vacuolar transport protein 4A, putative; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.432
Q4DNT6_TRYCC	KATNAL2-2	Q4DNT6	Q4DIH8	Vacuolar transport protein 4A, putative; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.432
Q4DNT6_TRYCC	Q4D4Y6_TRYCC	Q4DNT6	Q4D4Y6	Vacuolar transport protein 4A, putative; Belongs to the AAA ATPase family.	Katanin-like protein, putative; Belongs to the AAA ATPase family.	0.427
Q4E658_TRYCC	KATNAL2	Q4E658	Q4D5V3	Katanin-like protein, putative; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.404
Q4E658_TRYCC	KATNAL2-2	Q4E658	Q4DIH8	Katanin-like protein, putative; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.404