(8 nodes) Protein kinase A binding, and Protein kinase A signaling network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_034125	A-kinase anchor protein 1, mitochondrial. (496 aa)
	APZ42_028526	cAMP-dependent protein kinase catalytic subunit PRKX. (521 aa)
	APZ42_011807	A-kinase anchor protein 10, mitochondrial. (604 aa)
	APZ42_011684	cAMP-dependent protein kinase type II regulatory subunit. (305 aa)
	APZ42_001748	Putative cAMP-dependent protein kinase type I regulatory subunit. (99 aa)
	APZ42_026636	Uncharacterized protein. (1007 aa)
	APZ42_025863	AKAP7_NLS domain-containing protein. (263 aa)
	APZ42_021539	cAMP-dependent protein kinase type I regulatory subunit. (331 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001748	APZ42_011807	A0A164IRW4	A0A0P5YP81	Putative cAMP-dependent protein kinase type I regulatory subunit.	A-kinase anchor protein 10, mitochondrial.	0.850
APZ42_001748	APZ42_025863	A0A164IRW4	A0A164SP82	Putative cAMP-dependent protein kinase type I regulatory subunit.	AKAP7_NLS domain-containing protein.	0.624
APZ42_001748	APZ42_026636	A0A164IRW4	A0A164S1M7	Putative cAMP-dependent protein kinase type I regulatory subunit.	Uncharacterized protein.	0.761
APZ42_001748	APZ42_028526	A0A164IRW4	A0A0P5T2B6	Putative cAMP-dependent protein kinase type I regulatory subunit.	cAMP-dependent protein kinase catalytic subunit PRKX.	0.897
APZ42_001748	APZ42_034125	A0A164IRW4	A0A0P5FRB0	Putative cAMP-dependent protein kinase type I regulatory subunit.	A-kinase anchor protein 1, mitochondrial.	0.786
APZ42_011684	APZ42_011807	A0A162SX03	A0A0P5YP81	cAMP-dependent protein kinase type II regulatory subunit.	A-kinase anchor protein 10, mitochondrial.	0.850
APZ42_011684	APZ42_025863	A0A162SX03	A0A164SP82	cAMP-dependent protein kinase type II regulatory subunit.	AKAP7_NLS domain-containing protein.	0.624
APZ42_011684	APZ42_026636	A0A162SX03	A0A164S1M7	cAMP-dependent protein kinase type II regulatory subunit.	Uncharacterized protein.	0.761
APZ42_011684	APZ42_028526	A0A162SX03	A0A0P5T2B6	cAMP-dependent protein kinase type II regulatory subunit.	cAMP-dependent protein kinase catalytic subunit PRKX.	0.897
APZ42_011684	APZ42_034125	A0A162SX03	A0A0P5FRB0	cAMP-dependent protein kinase type II regulatory subunit.	A-kinase anchor protein 1, mitochondrial.	0.786
APZ42_011807	APZ42_001748	A0A0P5YP81	A0A164IRW4	A-kinase anchor protein 10, mitochondrial.	Putative cAMP-dependent protein kinase type I regulatory subunit.	0.850
APZ42_011807	APZ42_011684	A0A0P5YP81	A0A162SX03	A-kinase anchor protein 10, mitochondrial.	cAMP-dependent protein kinase type II regulatory subunit.	0.850
APZ42_011807	APZ42_021539	A0A0P5YP81	A0A164WKP3	A-kinase anchor protein 10, mitochondrial.	cAMP-dependent protein kinase type I regulatory subunit.	0.850
APZ42_011807	APZ42_026636	A0A0P5YP81	A0A164S1M7	A-kinase anchor protein 10, mitochondrial.	Uncharacterized protein.	0.598
APZ42_011807	APZ42_028526	A0A0P5YP81	A0A0P5T2B6	A-kinase anchor protein 10, mitochondrial.	cAMP-dependent protein kinase catalytic subunit PRKX.	0.744
APZ42_011807	APZ42_034125	A0A0P5YP81	A0A0P5FRB0	A-kinase anchor protein 10, mitochondrial.	A-kinase anchor protein 1, mitochondrial.	0.416
APZ42_021539	APZ42_011807	A0A164WKP3	A0A0P5YP81	cAMP-dependent protein kinase type I regulatory subunit.	A-kinase anchor protein 10, mitochondrial.	0.850
APZ42_021539	APZ42_025863	A0A164WKP3	A0A164SP82	cAMP-dependent protein kinase type I regulatory subunit.	AKAP7_NLS domain-containing protein.	0.624
APZ42_021539	APZ42_026636	A0A164WKP3	A0A164S1M7	cAMP-dependent protein kinase type I regulatory subunit.	Uncharacterized protein.	0.761
APZ42_021539	APZ42_028526	A0A164WKP3	A0A0P5T2B6	cAMP-dependent protein kinase type I regulatory subunit.	cAMP-dependent protein kinase catalytic subunit PRKX.	0.897