(5 nodes) GARP complex network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_034478	Vacuolar protein sorting-associated protein 52. (701 aa)
	APZ42_033015	Vacuolar protein sorting-associated protein 51. (728 aa)
	APZ42_028244	Vacuolar protein sorting-associated protein 53. (879 aa)
	APZ42_026584	Syndetin. (775 aa)
	APZ42_024842	Vacuolar protein sorting-associated protein 54. (937 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_024842	APZ42_026584	A0A164TR75	A0A164S4L8	Vacuolar protein sorting-associated protein 54.	Syndetin.	0.876
APZ42_024842	APZ42_028244	A0A164TR75	A0A164QN31	Vacuolar protein sorting-associated protein 54.	Vacuolar protein sorting-associated protein 53.	0.999
APZ42_024842	APZ42_033015	A0A164TR75	A0A164LGR9	Vacuolar protein sorting-associated protein 54.	Vacuolar protein sorting-associated protein 51.	0.996
APZ42_024842	APZ42_034478	A0A164TR75	A0A0P5DBF5	Vacuolar protein sorting-associated protein 54.	Vacuolar protein sorting-associated protein 52.	0.998
APZ42_026584	APZ42_024842	A0A164S4L8	A0A164TR75	Syndetin.	Vacuolar protein sorting-associated protein 54.	0.876
APZ42_026584	APZ42_028244	A0A164S4L8	A0A164QN31	Syndetin.	Vacuolar protein sorting-associated protein 53.	0.983
APZ42_026584	APZ42_033015	A0A164S4L8	A0A164LGR9	Syndetin.	Vacuolar protein sorting-associated protein 51.	0.983
APZ42_026584	APZ42_034478	A0A164S4L8	A0A0P5DBF5	Syndetin.	Vacuolar protein sorting-associated protein 52.	0.944
APZ42_028244	APZ42_024842	A0A164QN31	A0A164TR75	Vacuolar protein sorting-associated protein 53.	Vacuolar protein sorting-associated protein 54.	0.999
APZ42_028244	APZ42_026584	A0A164QN31	A0A164S4L8	Vacuolar protein sorting-associated protein 53.	Syndetin.	0.983
APZ42_028244	APZ42_033015	A0A164QN31	A0A164LGR9	Vacuolar protein sorting-associated protein 53.	Vacuolar protein sorting-associated protein 51.	0.999
APZ42_028244	APZ42_034478	A0A164QN31	A0A0P5DBF5	Vacuolar protein sorting-associated protein 53.	Vacuolar protein sorting-associated protein 52.	0.996
APZ42_033015	APZ42_024842	A0A164LGR9	A0A164TR75	Vacuolar protein sorting-associated protein 51.	Vacuolar protein sorting-associated protein 54.	0.996
APZ42_033015	APZ42_026584	A0A164LGR9	A0A164S4L8	Vacuolar protein sorting-associated protein 51.	Syndetin.	0.983
APZ42_033015	APZ42_028244	A0A164LGR9	A0A164QN31	Vacuolar protein sorting-associated protein 51.	Vacuolar protein sorting-associated protein 53.	0.999
APZ42_033015	APZ42_034478	A0A164LGR9	A0A0P5DBF5	Vacuolar protein sorting-associated protein 51.	Vacuolar protein sorting-associated protein 52.	0.994
APZ42_034478	APZ42_024842	A0A0P5DBF5	A0A164TR75	Vacuolar protein sorting-associated protein 52.	Vacuolar protein sorting-associated protein 54.	0.998
APZ42_034478	APZ42_026584	A0A0P5DBF5	A0A164S4L8	Vacuolar protein sorting-associated protein 52.	Syndetin.	0.944
APZ42_034478	APZ42_028244	A0A0P5DBF5	A0A164QN31	Vacuolar protein sorting-associated protein 52.	Vacuolar protein sorting-associated protein 53.	0.996
APZ42_034478	APZ42_033015	A0A0P5DBF5	A0A164LGR9	Vacuolar protein sorting-associated protein 52.	Vacuolar protein sorting-associated protein 51.	0.994