(35 nodes) COPII-mediated vesicle transport, and TRAPPIII protein complex network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_034562	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (216 aa)
	APZ42_020965	Ras-related protein Rab-1A. (203 aa)
	APZ42_013606	TRK-fused protein. (421 aa)
	APZ42_020318	Putative Trafficking protein particle complex subunit 12. (657 aa)
	APZ42_023487	Trafficking protein particle complex subunit 10. (1174 aa)
	APZ42_028181	Trafficking protein particle complex subunit 2. (140 aa)
	APZ42_028784	Vesicular integral-membrane protein VIP36. (321 aa)
	APZ42_030563	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (803 aa)
	APZ42_011483	Multiple coagulation factor deficiency protein 2. (192 aa)
	APZ42_011577	Lectin, mannose-binding, 1. (521 aa)
	APZ42_015195	Phospholipase DDHD2. (714 aa)
	APZ42_023585	Prolactin regulatory element-binding protein. (417 aa)
	APZ42_019396	Transport protein Sec31A. (1244 aa)
	APZ42_004973	Ankyrin repeat domain-containing protein 40. (254 aa)
	APZ42_012670	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (179 aa)
	APZ42_015159	Ras-related protein Rab-19. (217 aa)
	APZ42_019750	Transport Sec24B,-like protein. (400 aa)
	APZ42_015096	USP6 N-terminal-like protein. (385 aa)
	APZ42_013796	Uncharacterized protein. (1206 aa)
	APZ42_013186	TBC1 domain family member 20. (406 aa)
	APZ42_012391	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (186 aa)
	APZ42_011500	Putative Multiple coagulation factor deficiency protein 2. (78 aa)
	APZ42_011545	Protein transport Sec16A-like protein. (2112 aa)
	APZ42_033286	Protein transport protein Sec24C. (1058 aa)
	APZ42_028573	Trafficking protein particle complex subunit 11. (1111 aa)
	APZ42_026193	Trafficking protein particle complex subunit 9. (1319 aa)
	APZ42_025691	Uncharacterized protein. (238 aa)
	APZ42_025019	UPF0533 protein. (250 aa)
	APZ42_024010	Trafficking protein particle complex subunit 8. (1395 aa)
	APZ42_023261	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (192 aa)
	APZ42_021533	Transport protein Sec24B protein. (210 aa)
	APZ42_021416	Trafficking protein particle complex subunit 6B. (110 aa)
	APZ42_018567	Multiple coagulation factor deficiency protein 2. (250 aa)
	EOG090X0HJH	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (142 aa)
	APZ42_016760	TBC1 domain family member 22B. (461 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_004973	APZ42_011483	A0A0P6ET81	A0A0P5TBH1	Ankyrin repeat domain-containing protein 40.	Multiple coagulation factor deficiency protein 2.	0.556
APZ42_004973	APZ42_011500	A0A0P6ET81	A0A162SPI3	Ankyrin repeat domain-containing protein 40.	Putative Multiple coagulation factor deficiency protein 2.	0.556
APZ42_004973	APZ42_011545	A0A0P6ET81	A0A162SSN7	Ankyrin repeat domain-containing protein 40.	Protein transport Sec16A-like protein.	0.928
APZ42_004973	APZ42_011577	A0A0P6ET81	A0A0P5TKR5	Ankyrin repeat domain-containing protein 40.	Lectin, mannose-binding, 1.	0.776
APZ42_004973	APZ42_012391	A0A0P6ET81	A0A162RRA7	Ankyrin repeat domain-containing protein 40.	Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.642
APZ42_004973	APZ42_012670	A0A0P6ET81	A0A0P6H0X2	Ankyrin repeat domain-containing protein 40.	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.805
APZ42_004973	APZ42_013796	A0A0P6ET81	A0A162QFE9	Ankyrin repeat domain-containing protein 40.	Uncharacterized protein.	0.921
APZ42_004973	APZ42_015159	A0A0P6ET81	A0A0P6HWC3	Ankyrin repeat domain-containing protein 40.	Ras-related protein Rab-19.	0.582
APZ42_004973	APZ42_015195	A0A0P6ET81	A0A0P5YSY4	Ankyrin repeat domain-containing protein 40.	Phospholipase DDHD2.	0.775
APZ42_004973	APZ42_018567	A0A0P6ET81	A0A164Z0R4	Ankyrin repeat domain-containing protein 40.	Multiple coagulation factor deficiency protein 2.	0.556
APZ42_004973	APZ42_019750	A0A0P6ET81	A0A162CM36	Ankyrin repeat domain-containing protein 40.	Transport Sec24B,-like protein.	0.921
APZ42_004973	APZ42_020965	A0A0P6ET81	A0A0N8CTE8	Ankyrin repeat domain-containing protein 40.	Ras-related protein Rab-1A.	0.582
APZ42_004973	APZ42_021416	A0A0P6ET81	A0A164WNY9	Ankyrin repeat domain-containing protein 40.	Trafficking protein particle complex subunit 6B.	0.697
APZ42_004973	APZ42_021533	A0A0P6ET81	A0A164WKY7	Ankyrin repeat domain-containing protein 40.	Transport protein Sec24B protein.	0.921
APZ42_004973	APZ42_023261	A0A0P6ET81	A0A164V2T5	Ankyrin repeat domain-containing protein 40.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.977
APZ42_004973	APZ42_023487	A0A0P6ET81	A0A0N8DFF0	Ankyrin repeat domain-containing protein 40.	Trafficking protein particle complex subunit 10.	0.659
APZ42_004973	APZ42_023585	A0A0P6ET81	A0A0P5YY79	Ankyrin repeat domain-containing protein 40.	Prolactin regulatory element-binding protein.	0.525
APZ42_004973	APZ42_025691	A0A0P6ET81	A0A164SS12	Ankyrin repeat domain-containing protein 40.	Uncharacterized protein.	0.582
APZ42_004973	APZ42_026193	A0A0P6ET81	A0A164SDY9	Ankyrin repeat domain-containing protein 40.	Trafficking protein particle complex subunit 9.	0.644
APZ42_004973	APZ42_028181	A0A0P6ET81	A0A0P4WQ33	Ankyrin repeat domain-containing protein 40.	Trafficking protein particle complex subunit 2.	0.668