(43 nodes) Mixed, incl. Cellular hormone metabolic process, and Electron transport from NADPH to Ferredoxin network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_011800	Dehydrogenase/reductase SDR family member. (277 aa)
	APZ42_019175	Short-chain dehydrogenase/reductase family 16C member 6; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (306 aa)
	APZ42_026057	3-chlorobenzoate-3,4-dioxygenase oxygenase subunit. (453 aa)
	APZ42_011303	Sodium-dependent phosphate transport protein 2B. (606 aa)
	APZ42_019660	Fumarylacetoacetate hydrolase domain-containing protein 2A. (288 aa)
	APZ42_015954	Dehydrogenase/reductase sdr family member. (259 aa)
	APZ42_019663	Fumarylacetoacetate hydrolase domain-containing protein 2A. (297 aa)
	APZ42_014556	D-beta-hydroxybutyrate dehydrogenase, mitochondrial. (394 aa)
	APZ42_013409	Dehydrogenase/reductase SDR family member on chromosome X. (333 aa)
	APZ42_032143	Epidermal retinol dehydrogenase 2; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (304 aa)
	APZ42_032135	Short-chain dehydrogenase/reductase family 16C; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (305 aa)
	APZ42_005677	Putative Aldehyde dehydrogenase. (115 aa)
	APZ42_021633	All-trans-retinol 13,14-reductase. (632 aa)
	APZ42_005785	Putative Retinal dehydrogenase 1. (135 aa)
	APZ42_005014	Kynurenine/alpha-aminoadipate aminotransferase-like protein. (143 aa)
	APZ42_015895	Dehydrogenase/reductase SDR family member 7; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (307 aa)
	APZ42_011727	NADPH:adrenodoxin oxidoreductase, mitochondrial. (486 aa)
	APZ42_005854	Putative NADH-dependent flavin oxidoreductase yqiG. (89 aa)
	APZ42_005561	NADH-dependent flavin oxidoreductase yqiG-like protein. (101 aa)
	APZ42_002992	Putative NADH-dependent flavin oxidoreductase yqiG. (96 aa)
	APZ42_001585	Retinol dehydrogenase 12. (199 aa)
	APZ42_030720	Retinal dehydrogenase 1. (108 aa)
	APZ42_029468	WW domain-containing oxidoreductase. (279 aa)
	APZ42_029607	Putative Retinol dehydrogenase 12. (78 aa)
	APZ42_029605	Dehydrogenase/reductase SDR family member 12. (336 aa)
	APZ42_029598	Retinol dehydrogenase 14. (336 aa)
	APZ42_028984	Beta,beta-carotene 15,15'-dioxygenase. (534 aa)
	APZ42_027262	Retinol dehydrogenase 12; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (298 aa)
	APZ42_026637	Retinol dehydrogenase 13. (106 aa)
	APZ42_024067	Beta,beta-carotene 15,15'-dioxygenase. (600 aa)
	APZ42_022466	Uncharacterized protein. (352 aa)
	APZ42_020576	Putative Adrenodoxin. (136 aa)
	APZ42_020554	Dehydrogenase/reductase SDR family member 11; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (258 aa)
	APZ42_020553	Lingerer. (660 aa)
	APZ42_020641	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (420 aa)
	APZ42_020470	Ferredoxin 2. (183 aa)
	APZ42_020462	Neverland. (436 aa)
	APZ42_019662	Short-chain dehydrogenase/reductase. (313 aa)
	APZ42_018886	All-trans-retinol 13,14-reductase. (635 aa)
	APZ42_018888	Uncharacterized protein. (474 aa)
	APZ42_018182	Tetratricopeptide repeat protein. (232 aa)
	APZ42_017558	Chitin binding peritrophin-A. (258 aa)
	APZ42_017017	Putative 3-keto-steroid reductase. (320 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001585	APZ42_002992	A0A164IVS5	A0A164HWR9	Retinol dehydrogenase 12.	Putative NADH-dependent flavin oxidoreductase yqiG.	0.495
APZ42_001585	APZ42_005014	A0A164IVS5	A0A162CU64	Retinol dehydrogenase 12.	Kynurenine/alpha-aminoadipate aminotransferase-like protein.	0.557
APZ42_001585	APZ42_005561	A0A164IVS5	A0A164GDP6	Retinol dehydrogenase 12.	NADH-dependent flavin oxidoreductase yqiG-like protein.	0.495
APZ42_001585	APZ42_005677	A0A164IVS5	A0A162BXS7	Retinol dehydrogenase 12.	Putative Aldehyde dehydrogenase.	0.568
APZ42_001585	APZ42_005785	A0A164IVS5	A0A162CSS7	Retinol dehydrogenase 12.	Putative Retinal dehydrogenase 1.	0.541
APZ42_001585	APZ42_005854	A0A164IVS5	A0A164G7Y2	Retinol dehydrogenase 12.	Putative NADH-dependent flavin oxidoreductase yqiG.	0.495
APZ42_001585	APZ42_011727	A0A164IVS5	A0A162SYZ8	Retinol dehydrogenase 12.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.451
APZ42_001585	APZ42_011800	A0A164IVS5	A0A0N8DC99	Retinol dehydrogenase 12.	Dehydrogenase/reductase SDR family member.	0.622
APZ42_001585	APZ42_014556	A0A164IVS5	A0A0P5TGC8	Retinol dehydrogenase 12.	D-beta-hydroxybutyrate dehydrogenase, mitochondrial.	0.508
APZ42_001585	APZ42_015895	A0A164IVS5	A0A162NEU7	Retinol dehydrogenase 12.	Dehydrogenase/reductase SDR family member 7; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.486
APZ42_001585	APZ42_015954	A0A164IVS5	A0A0P5SIB3	Retinol dehydrogenase 12.	Dehydrogenase/reductase sdr family member.	0.506
APZ42_001585	APZ42_017017	A0A164IVS5	A0A165AAF7	Retinol dehydrogenase 12.	Putative 3-keto-steroid reductase.	0.623
APZ42_001585	APZ42_017558	A0A164IVS5	A0A164ZY01	Retinol dehydrogenase 12.	Chitin binding peritrophin-A.	0.451
APZ42_001585	APZ42_018182	A0A164IVS5	A0A164Z8T4	Retinol dehydrogenase 12.	Tetratricopeptide repeat protein.	0.506
APZ42_001585	APZ42_018886	A0A164IVS5	A0A164YWL2	Retinol dehydrogenase 12.	All-trans-retinol 13,14-reductase.	0.762
APZ42_001585	APZ42_018888	A0A164IVS5	A0A164YWN0	Retinol dehydrogenase 12.	Uncharacterized protein.	0.762
APZ42_001585	APZ42_019175	A0A164IVS5	A0A0P4XDL6	Retinol dehydrogenase 12.	Short-chain dehydrogenase/reductase family 16C member 6; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.529
APZ42_001585	APZ42_019660	A0A164IVS5	A0A0P5GNW3	Retinol dehydrogenase 12.	Fumarylacetoacetate hydrolase domain-containing protein 2A.	0.529
APZ42_001585	APZ42_019662	A0A164IVS5	A0A164YC03	Retinol dehydrogenase 12.	Short-chain dehydrogenase/reductase.	0.536
APZ42_001585	APZ42_019663	A0A164IVS5	A0A0P5T3G7	Retinol dehydrogenase 12.	Fumarylacetoacetate hydrolase domain-containing protein 2A.	0.529