(34 nodes) Mixed, incl. Domain present in PSD-95, Dlg, and ZO-1/2., and Assembly and cell surface presentation of NMDA receptors network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EOG090X0GKM	Myosin regulatory light chain 2, atrial. (148 aa)
	APZ42_020981	Disks large 1 tumor suppressor protein; Belongs to the MAGUK family. (912 aa)
	APZ42_012137	Glutamate receptor ionotropic, NMDA. (989 aa)
	APZ42_027371	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (624 aa)
	APZ42_026774	MORN repeat-containing protein 4. (180 aa)
	APZ42_029767	annotation not available (1106 aa)
	APZ42_021856	Uncharacterized protein. (489 aa)
	APZ42_018254	Calmodulin; Belongs to the calmodulin family. (149 aa)
	APZ42_018209	MAGUK p55 subfamily member. (262 aa)
	APZ42_002697	MAGUK p55 subfamily member. (193 aa)
	APZ42_023905	Patj. (1972 aa)
	APZ42_026442	Protein crumbs. (2334 aa)
	APZ42_005669	PDZ domain-containing protein. (70 aa)
	EOG090X09SP	Partitioning defective 6 gamma. (322 aa)
	APZ42_032159	PBPe domain-containing protein. (509 aa)
	APZ42_031106	MAGUK p55 subfamily member. (264 aa)
	APZ42_030705	Calcium/calmodulin-dependent protein kinase type II alpha chain. (507 aa)
	APZ42_030520	Syntaxin-binding 5-like protein. (1349 aa)
	APZ42_030566	NMDA receptor 2; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1298 aa)
	APZ42_030388	Uncharacterized protein. (781 aa)
	APZ42_028035	Lethal giant larvae protein. (1136 aa)
	APZ42_026778	Putative Calcium/calmodulin-dependent protein kinase type II subunit alpha. (668 aa)
	APZ42_026822	Putative Peripheral plasma membrane protein CASK. (226 aa)
	APZ42_026816	Peripheral plasma membrane protein CASK. (318 aa)
	APZ42_025116	PDZ domain-containing protein. (1127 aa)
	APZ42_024779	Disks large 5. (1991 aa)
	APZ42_023243	Lin-10 protein. (306 aa)
	APZ42_023214	Uncharacterized protein. (407 aa)
	APZ42_022189	Uncharacterized protein. (1293 aa)
	APZ42_021977	Putative Partitioning-defective 3 protein B. (609 aa)
	APZ42_019490	MAGUK p55 subfamily member 6; Belongs to the MAGUK family. (1368 aa)
	EOG090X0ESN	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family. (200 aa)
	APZ42_017788	Syntaxin-binding 5-like protein. (276 aa)
	APZ42_017331	Frequenin-1. (187 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_002697	APZ42_012137	A0A162CY53	A0A0P5E9P8	MAGUK p55 subfamily member.	Glutamate receptor ionotropic, NMDA.	0.634
APZ42_002697	APZ42_017331	A0A162CY53	A0A164ZTL3	MAGUK p55 subfamily member.	Frequenin-1.	0.450
APZ42_002697	APZ42_017788	A0A162CY53	A0A164ZKM6	MAGUK p55 subfamily member.	Syntaxin-binding 5-like protein.	0.582
APZ42_002697	APZ42_018209	A0A162CY53	A0A162CI13	MAGUK p55 subfamily member.	MAGUK p55 subfamily member.	0.875
APZ42_002697	APZ42_018254	A0A162CY53	A0A0P6GHU6	MAGUK p55 subfamily member.	Calmodulin; Belongs to the calmodulin family.	0.450
APZ42_002697	APZ42_020981	A0A162CY53	A0A0P4ZGY7	MAGUK p55 subfamily member.	Disks large 1 tumor suppressor protein; Belongs to the MAGUK family.	0.401
APZ42_002697	APZ42_021856	A0A162CY53	A0A0P6BT53	MAGUK p55 subfamily member.	Uncharacterized protein.	0.766
APZ42_002697	APZ42_021977	A0A162CY53	A0A164W6R4	MAGUK p55 subfamily member.	Putative Partitioning-defective 3 protein B.	0.588
APZ42_002697	APZ42_022189	A0A162CY53	A0A164W4W7	MAGUK p55 subfamily member.	Uncharacterized protein.	0.738
APZ42_002697	APZ42_023214	A0A162CY53	A0A164V4N1	MAGUK p55 subfamily member.	Uncharacterized protein.	0.605
APZ42_002697	APZ42_023243	A0A162CY53	A0A164V401	MAGUK p55 subfamily member.	Lin-10 protein.	0.738
APZ42_002697	APZ42_023905	A0A162CY53	A0A162DFX9	MAGUK p55 subfamily member.	Patj.	0.800
APZ42_002697	APZ42_025116	A0A162CY53	A0A164TG08	MAGUK p55 subfamily member.	PDZ domain-containing protein.	0.694
APZ42_002697	APZ42_026774	A0A162CY53	A0A0P5WN34	MAGUK p55 subfamily member.	MORN repeat-containing protein 4.	0.587
APZ42_002697	APZ42_026778	A0A162CY53	A0A164RYD4	MAGUK p55 subfamily member.	Putative Calcium/calmodulin-dependent protein kinase type II subunit alpha.	0.520
APZ42_002697	APZ42_026816	A0A162CY53	A0A164RYF7	MAGUK p55 subfamily member.	Peripheral plasma membrane protein CASK.	0.537
APZ42_002697	APZ42_026822	A0A162CY53	A0A164RYE7	MAGUK p55 subfamily member.	Putative Peripheral plasma membrane protein CASK.	0.493
APZ42_002697	APZ42_028035	A0A162CY53	A0A164QVK4	MAGUK p55 subfamily member.	Lethal giant larvae protein.	0.611
APZ42_002697	APZ42_030388	A0A162CY53	A0A164NT58	MAGUK p55 subfamily member.	Uncharacterized protein.	0.605
APZ42_002697	APZ42_030520	A0A162CY53	A0A164NK76	MAGUK p55 subfamily member.	Syntaxin-binding 5-like protein.	0.582