(35 nodes) Mixed, incl. Processing of SMDT1, and Band 7/SPFH domain superfamily network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_029246	Stomatin protein 2, mitochondrial. (358 aa)
	APZ42_028749	Mitochondrial chaperone BCS1; Belongs to the AAA ATPase family. (419 aa)
	APZ42_028382	Prohibitin. (272 aa)
	APZ42_013828	AFG3 2-like protein. (796 aa)
	APZ42_018390	Prohibitin. (301 aa)
	APZ42_020454	Presenilins-associated rhomboid protein, mitochondrial. (342 aa)
	APZ42_016296	Complement component 1 Q subcomponent-binding protein, mitochondrial. (269 aa)
	APZ42_016095	Tyrosine-protein kinase. (524 aa)
	APZ42_001931	Band 7-like protein. (166 aa)
	APZ42_002254	Uncharacterized protein. (112 aa)
	APZ42_015658	Putative Actin-binding protein anillin. (508 aa)
	APZ42_015083	Anion exchange protein. (1204 aa)
	APZ42_014634	Band 7 protein. (239 aa)
	APZ42_014632	Band 7 protein. (214 aa)
	APZ42_014630	AFG3 2-like protein. (806 aa)
	APZ42_013206	ATP-dependent Zinc metalloprotease YME1; Belongs to the AAA ATPase family. (650 aa)
	APZ42_012810	Rhomboid-related 3-like protein. (278 aa)
	APZ42_002113	Rhomboid-like protein. (138 aa)
	APZ42_032409	EF-hand domain-containing family member A2. (396 aa)
	APZ42_032374	Pleckstrin domain-containing family F member 2. (1243 aa)
	APZ42_029769	Calcium uptake protein 1. (471 aa)
	APZ42_029817	Stomatin 1-like protein. (250 aa)
	APZ42_028575	Flotillin-2; Belongs to the band 7/mec-2 family. Flotillin subfamily. (424 aa)
	APZ42_024070	Rhomboid-related protein 2. (384 aa)
	APZ42_022951	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (207 aa)
	APZ42_022058	Uncharacterized protein. (1100 aa)
	APZ42_021849	CUB domain-containing protein. (444 aa)
	APZ42_021496	Flotillin-2; Belongs to the band 7/mec-2 family. Flotillin subfamily. (426 aa)
	APZ42_020362	Putative Actin-binding protein anillin. (624 aa)
	APZ42_019864	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (174 aa)
	APZ42_019876	Calcium uniporter protein, mitochondrial. (124 aa)
	APZ42_019569	Serine/threonine-protein kinase MRCK beta; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (2003 aa)
	APZ42_019696	Putative Juvenile hormone esterase binding protein. (271 aa)
	APZ42_019246	Uncharacterized protein. (93 aa)
	APZ42_017734	Flotillin-2; Belongs to the band 7/mec-2 family. Flotillin subfamily. (428 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001931	APZ42_002113	A0A162C6C6	A0A164IHZ5	Band 7-like protein.	Rhomboid-like protein.	0.440
APZ42_001931	APZ42_002254	A0A162C6C6	A0A162CZ22	Band 7-like protein.	Uncharacterized protein.	0.496
APZ42_001931	APZ42_012810	A0A162C6C6	A0A162RD18	Band 7-like protein.	Rhomboid-related 3-like protein.	0.440
APZ42_001931	APZ42_013206	A0A162C6C6	A0A162R4G6	Band 7-like protein.	ATP-dependent Zinc metalloprotease YME1; Belongs to the AAA ATPase family.	0.724
APZ42_001931	APZ42_013828	A0A162C6C6	A0A0P4WQV2	Band 7-like protein.	AFG3 2-like protein.	0.724
APZ42_001931	APZ42_014630	A0A162C6C6	A0A162PSJ7	Band 7-like protein.	AFG3 2-like protein.	0.724
APZ42_001931	APZ42_015083	A0A162C6C6	A0A162P652	Band 7-like protein.	Anion exchange protein.	0.436
APZ42_001931	APZ42_015658	A0A162C6C6	A0A162NTC1	Band 7-like protein.	Putative Actin-binding protein anillin.	0.561
APZ42_001931	APZ42_016296	A0A162C6C6	A0A0P5ZJ56	Band 7-like protein.	Complement component 1 Q subcomponent-binding protein, mitochondrial.	0.651
APZ42_001931	APZ42_017734	A0A162C6C6	A0A164ZLV0	Band 7-like protein.	Flotillin-2; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.424
APZ42_001931	APZ42_019246	A0A162C6C6	A0A164YEL1	Band 7-like protein.	Uncharacterized protein.	0.535
APZ42_001931	APZ42_019569	A0A162C6C6	A0A164YA17	Band 7-like protein.	Serine/threonine-protein kinase MRCK beta; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.546
APZ42_001931	APZ42_019696	A0A162C6C6	A0A164YCS5	Band 7-like protein.	Putative Juvenile hormone esterase binding protein.	0.596
APZ42_001931	APZ42_019864	A0A162C6C6	A0A164XT43	Band 7-like protein.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.487
APZ42_001931	APZ42_019876	A0A162C6C6	A0A164XTD7	Band 7-like protein.	Calcium uniporter protein, mitochondrial.	0.546
APZ42_001931	APZ42_020362	A0A162C6C6	A0A164XJT6	Band 7-like protein.	Putative Actin-binding protein anillin.	0.561
APZ42_001931	APZ42_020454	A0A162C6C6	A0A0P5Z6W3	Band 7-like protein.	Presenilins-associated rhomboid protein, mitochondrial.	0.440
APZ42_001931	APZ42_021496	A0A162C6C6	A0A164WLK7	Band 7-like protein.	Flotillin-2; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.424
APZ42_001931	APZ42_022058	A0A162C6C6	A0A164W0I8	Band 7-like protein.	Uncharacterized protein.	0.426
APZ42_001931	APZ42_022951	A0A162C6C6	A0A164VB60	Band 7-like protein.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.487